[Home] | [Total List]

[186869_at]

Description C05B5.1 /REP_DB=WormBase Gene ID /WP=CE00620 /TR=SW:P34289 /GB=CAA83590.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 10.1
(-3)
A 		26.8
(1)
A 		28.9
(1.5)
A 		35.4
(3)
A 		25
B 22.6
(0.6)
A 		33.2
(3)
A 		6.2
(-3)
A 		12
(-1.7)
A 		27
C 11.5
(-3)
A 		16.6
(-1.6)
A 		33.6
(3)
A 		27.8
(1.4)
A 		22
avr 14.7
(-3) 		25.5
(3) 		22.9
(1.6) 		25.1
(2.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 2.9
(-3)
A 		7.2
(-2.3)
A 		17.9
(-0.4)
A 		5.3
(-2.6)
A 		37.7
(3)
A 		9.8
(-1.8)
A 		35
B 24.6
(-0.6)
A 		40.2
(3)
A 		14.5
(-3)
A 		16.3
(-2.6)
A 		24.9
(-0.6)
A 		18.6
(-2)
A 		26
C 18.8
(-2.4)
A 		23.8
(0.6)
A 		23.4
(0.4)
A 		27.7
(3)
A 		19
(-2.3)
A 		17.9
(-3)
A 		10
avr 15.4
(-3) 		23.7
(1.2) 		18.6
(-1.4) 		16.4
(-2.5) 		27.2
(3) 		15.4
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.7
(-3)
A 		5.8
(0.3)
A 		7.5
(3)
A 		5.2
(-0.6)
A 		4
B 7.2
(2.1)
A 		8.2
(3)
A 		1.4
(-3)
A 		2.6
(-1.9)
A 		7
C 3.8
(-3)
A 		4.8
(-2.2)
A 		11.7
(3)
A 		4.7
(-2.3)
A 		8
avr 4.9
(-1.4) 		6.3
(1.7) 		6.9
(3) 		4.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 0.5
(-3)
A 		2.6
(-1.8)
A 		3.9
(-1.1)
A 		1.4
(-2.5)
A 		11.4
(3)
A 		2.4
(-2)
A 		11
B 8.5
(0)
A 		13.4
(3)
A 		3.5
(-3)
A 		4.3
(-2.5)
A 		10.1
(1)
A 		6.9
(-0.9)
A 		10
C 7
(1.9)
A 		7.3
(3)
A 		6
(-1.6)
A 		5.6
(-3)
A 		6.1
(-1.2)
A 		6
(-1.6)
A 		2
avr 5.3
(-1.3) 		7.8
(1.4) 		4.5
(-2.2) 		3.8
(-3) 		9.2
(3) 		5.1
(-1.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186869_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6853
Sequence Type Exemplar sequence
Representative Public ID C05B5.1 NCBI
Target Description C05B5.1 /REP_DB=WormBase Gene ID /WP=CE00620 /TR=SW:P34289 /GB=CAA83590.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066814(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066814 NCBI Caenorhabditis elegans C05B5.1 (C05B5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000026769 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9987659:9988312:-1 9/11 None
C05B5.1 ENSEMBL cdna:known chromosome:CEL140:III:9987478:9988312:-1 gene:C05B5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026739 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9987473-9988308(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05B5.1
Entrez Gene 182245 Entrez gene
SwissProt P34289 EMBL-EBI
WormBase CE00620 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83590 Hypothetical protein C05B5.1 [Caenorhabditis elegans] ref|NP_499215.1| C05B5.1 [Caenorhabditis elegans] sp|P34289|YKO1_CAEEL Hypothetical protein C05B5.1 in chromosome III 4.0E-81
blast CAA83590 Hypothetical protein C05B5.1 [Caenorhabditis elegans] ref|NP_499215.1| C05B5.1 [Caenorhabditis elegans] sp|P34289|YKO1_CAEEL Hypothetical protein C05B5.1 in chromosome III 7.0E-66
blast CAE65075 Hypothetical protein CBG09929 [Caenorhabditis briggsae] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:186869_AT
aaagtttgtacgctgattctcctgttctctgtaattaatcaaatgaaatgtggaagtacg
acagactgtgccatgagagtattcaaagagacaataaaagaaatgtcagaagtagctgat
cttcaattggaaacacttcagaatttatcgccagatacgaaaaggcaaatgaaaattgcc
atcatggacgtgctgacttcaatgggtcttttccttgaaatgtcaactgcatcatcattc
tcttttgcgactcttccaatctacatgctccgtgctcaaaaccttatgaatcttctgagc
atggatctggaaaatcttcaaccagaacaaggaactctttccgagtccgttgaaaaaatg
aagaatatgttgatatccgtgcatgcctcgccgtcatcacacttagaaccttctgggcac
gg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTTTGTACGCTGATTCTCCTGT 253 123 22 Antisense
ATTCTCCTGTTCTCTGTAATTAATC 254 11 37 Antisense
AACACTTCAGAATTTATCGCCAGAT 680 133 153 Antisense
TGCCATCATGGACGTGCTGACTTCA 507 585 198 Antisense
GCTGACTTCAATGGGTCTTTTCCTT 235 297 213 Antisense
TGTCAACTGCATCATCATTCTCTTT 517 559 242 Antisense
TGCTCCGTGCTCAAAACCTTATGAA 393 581 287 Antisense
GAATCTTCTGAGCATGGATCTGGAA 525 327 309 Antisense
CAAGGAACTCTTTCCGAGTCCGTTG 640 157 349 Antisense
TATGTTGATATCCGTGCATGCCTCG 7 657 387 Antisense
CACACTTAGAACCTTCTGGGCACGG 486 193 419 Antisense
Sequence Source Affymetrix Proprietary Database