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[186868_at]

Description Y77E11A.8 /REP_DB=WormBase Gene ID /WP=CE25622 /TR=Q9N4B4 /GB=AAF36078.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 4.1
(-3)
A 		33.6
(3)
A 		12.6
(-1.3)
A 		6.2
(-2.6)
A 		30
B 9.2
(-2.3)
A 		27.7
(2.9)
A 		6.6
(-3)
A 		27.9
(3)
A 		21
C 14.5
(-2.6)
A 		13.1
(-3)
A 		18
(-1.5)
A 		32.8
(3)
A 		20
avr 9.3
(-3) 		24.8
(3) 		12.4
(-1.8) 		22.3
(2) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 16.3
(-1.4)
A 		12.1
(-3)
A 		27.6
(3)
A 		20.7
(0.3)
A 		25.7
(2.3)
A 		16
(-1.5)
A 		16
B 3.5
(-2.8)
A 		2.8
(-3)
A 		2.9
(-3)
A 		30.7
(3)
A 		5.3
(-2.5)
A 		24.3
(1.6)
A 		28
C 4.6
(-1.4)
A 		14.4
(2.6)
A 		13.6
(2.3)
A 		15.4
(3)
A 		2.9
(-2.1)
A 		0.6
(-3)
A 		15
avr 8.1
(-3) 		9.8
(-2.3) 		14.7
(-0.2) 		22.3
(3) 		11.3
(-1.6) 		13.6
(-0.7) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.5
(-2.4)
A 		7.3
(3)
A 		3.3
(-0.8)
A 		0.9
(-3)
A 		6
B 2.9
(-1.4)
A 		6.8
(3)
A 		1.5
(-3)
A 		6
(2.1)
A 		5
C 4.8
(-0.6)
A 		3.8
(-3)
A 		6.3
(3)
A 		5.5
(1.1)
A 		3
avr 3.1
(-3) 		6
(3) 		3.7
(-1.8) 		4.1
(-0.9) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3
(-3)
A 		4.3
(-1.4)
A 		6
(0.8)
A 		5.3
(-0.1)
A 		7.8
(3)
A 		3.9
(-1.9)
A 		5
B 1.2
(-2.6)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		8.1
(2.3)
A 		2.1
(-2)
A 		9
(3)
A 		8
C 1.7
(-0.9)
A 		4.4
(3)
A 		3.5
(1.7)
A 		3.1
(1.1)
A 		0.9
(-2)
A 		0.2
(-3)
A 		4
avr 2
(-3) 		3.2
(-0.9) 		3.4
(-0.6) 		5.5
(3) 		3.6
(-0.3) 		4.4
(1.1) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186868_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10437
Sequence Type Exemplar sequence
Representative Public ID Y77E11A.8 NCBI
Target Description Y77E11A.8 /REP_DB=WormBase Gene ID /WP=CE25622 /TR=Q9N4B4 /GB=AAF36078.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067678
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000027305 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1423094:1426348:-1 11/11 None
GENEFINDER00000027322 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1423051:1424497:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067678 4/11 Cross Hyb Matching Probes A 
Y77E11A.8 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1423099-1424503(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 1.0E-116
blast AAF36078 Hypothetical protein Y77E11A.8 [Caenorhabditis elegans] ref|NP_500079.2| Y77E11A.8 [Caenorhabditis elegans] 5.0E-78
blast AAF36078 Hypothetical protein Y77E11A.8 [Caenorhabditis elegans] ref|NP_500079.2| Y77E11A.8 [Caenorhabditis elegans] 9.0E-78
blast AAF36070 Hypothetical protein Y77E11A.9 [Caenorhabditis elegans] ref|NP_500080.2| Y77E11A.9 [Caenorhabditis elegans] 5.0E-76
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 1.0E-63
blast CAA92739 Hypothetical protein F22B3.7 [Caenorhabditis elegans] ref|NP_502158.2| F22B3.7 [Caenorhabditis elegans] 2.0E-37
Sequence
Target Sequence 
>C. ELEGANS:186868_AT
gactatccaccatattggccttaccacaccgactacacaatctacgcaacactcaccgga
tggaagatttcttataaaagtgagatagaaattcaaactttcattgagaatgttttgttt
gaaaatcagatatatcgaaactccaataccggatcattcacatacaacgaagctgccact
tcatgtgaatcagccgacaacgcactattagcagctccactgtatccggaagatctcaaa
aagttttcagaactaggagaggttcagcgtaataaaacagctaatcgcaacatctatgcc
agaattgatggaattcgaacaaaagcatgtcaatcaactccgcgtacaccttattgcatg
tctccgaagggtttcacattccttagctccgttcccactttcgaacattacaattgggtg
accaactcgtccgcaatggcaaccgccaatgataattgtcttgtgctggtttttaatggg
aacaatgcagtgaaagtggatgttaaatcatgcgaaggcaacttcaatccccttccagct
caactatttttttgctcaagtccagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTATCCACCATATTGGCCTTACC 18 373 310 Antisense
CGACTACACAATCTACGCAACACTC 113 253 339 Antisense
GATATATCGAAACTCCAATACCGGA 105 411 438 Antisense
ATACCGGATCATTCACATACAACGA 478 21 455 Antisense
CAACGAAGCTGCCACTTCATGTGAA 329 187 474 Antisense
TTCATGTGAATCAGCCGACAACGCA 46 687 489 Antisense
CGACAACGCACTATTAGCAGCTCCA 9 253 504 Antisense
GCAGCTCCACTGTATCCGGAAGATC 447 313 520 Antisense
CAGCTAATCGCAACATCTATGCCAG 43 203 587 Antisense
CCCTTCCAGCTCAACTATTTTTTTG 358 259 839 Antisense
AACTATTTTTTTGCTCAAGTCCAGC 258 139 851 Antisense
Sequence Source Affymetrix Proprietary Database