[Home] | [Total List]

[186867_s_at]

Description C17H12.13 /REP_DB=WormBase Gene ID /WP=CE19361 /TR=O45088 /GB=AAD34649.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 69      6grp_high1_10_10 > 98      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 87      6grp_total > 96      4grp_total > 13      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1100
1 2 3 4 range
A 1156.4
(-0.3)
P 		876.3
(-1.8)
P 		654.5
(-3)
P 		1754.4
(3)
P 		1100
B 1171.5
(-0.3)
P 		872.5
(-2.1)
P 		722.2
(-3)
P 		1737.8
(3)
P 		1016
C 1066.2
(-1)
P 		807.7
(-3)
P 		804.4
(-3)
P 		1604.1
(3)
P 		800
avr 1131.4
(-0.5) 		852.2
(-2.2) 		727
(-3) 		1698.8
(3) 		972

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 664
1 2 3 4 5 6 range
A 870.7
(-3)
P 		916.1
(-2.4)
P 		1002.5
(-1.3)
P 		1143.2
(0.6)
P 		1106.4
(0.1)
P 		1323.3
(3)
P 		453
B 854
(-2.8)
P 		831.1
(-3)
P 		1194.8
(0.5)
P 		1027.5
(-1.1)
P 		1449.4
(3)
P 		1384.1
(2.4)
P 		618
C 876.7
(-3)
P 		1103.7
(-0.8)
P 		945
(-2.3)
P 		1261.5
(0.7)
P 		1351.7
(1.6)
P 		1495.4
(3)
P 		619
avr 867.1
(-3) 		950.3
(-2.1) 		1047.4
(-1) 		1144.1
(0.1) 		1302.5
(1.9) 		1400.9
(3) 		534
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 421
(3)
P 		190.2
(-2.5)
P 		171.1
(-3)
P 		256.8
(-0.9)
P 		250
B 373.6
(3)
P 		215.5
(-1.6)
P 		167.3
(-3)
P 		370.3
(2.9)
P 		206
C 352.9
(3)
P 		232.2
(-3)
P 		280.4
(-0.6)
P 		270.5
(-1.1)
P 		121
avr 382.5
(3) 		212.6
(-2.8) 		206.3
(-3) 		299.2
(0.2) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 160.5
(-3)
P 		325.8
(2.7)
P 		218.3
(-1)
P 		290
(1.5)
P 		333.9
(3)
P 		322.2
(2.6)
P 		173
B 297.2
(-2.5)
P 		276.6
(-2.9)
P 		290.1
(-2.7)
P 		272.1
(-3)
P 		588.9
(3)
P 		516.1
(1.6)
P 		317
C 325
(-1.1)
P 		336.8
(-0.8)
P 		240.5
(-3)
P 		253.7
(-2.7)
P 		437.4
(1.5)
P 		500.6
(3)
P 		260
avr 260.9
(-2.7) 		313.1
(-1.1) 		249.6
(-3) 		271.9
(-2.3) 		453.4
(3) 		446.3
(2.8) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186867_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8444
Sequence Type Exemplar sequence
Representative Public ID C17H12.13 NCBI
Target Description C17H12.13 /REP_DB=WormBase Gene ID /WP=CE19361 /TR=O45088 /GB=AAD34649.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068636(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068636 NCBI Caenorhabditis elegans C17H12.13 (C17H12.13) mRNA, complete cds. 11/11 None
SNAP00000015103 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6778139:6779454:1 11/11 None
GENEFINDER00000015125 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6778139:6779454:1 11/11 None
C17H12.13 ENSEMBL cdna:known chromosome:CEL140:IV:6770794:6779771:1 gene:C17H12.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6778144-6779460(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C17H12.13
Entrez Gene 177439 Entrez gene
WormBase CE37201 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_501037 C17H12.13 [Caenorhabditis elegans] 1.0E-159
blast AAZ82857 Hypothetical protein C17H12.13 [Caenorhabditis elegans] 1.0E-129
blast AAZ82857 Hypothetical protein C17H12.13 [Caenorhabditis elegans] 1.0E-122
blast NP_501037 C17H12.13 [Caenorhabditis elegans] 1.0E-122
blast CAE61484 Hypothetical protein CBG05378 [Caenorhabditis briggsae] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 4.3E-5
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 4.3E-5
Sequence
Target Sequence 
>C. ELEGANS:186867_S_AT
taacagtgatgctccgcgatctggttcaggacagtcttcaatgctcatcaacgtgtgtca
ttcgtgacgtcactactcgtcaaatcgacggaatcgctttggcttgcaaaacttcaatct
ttgacaaacaaattgatcgtctatgtgcttacgaattcagagaacaacgtgtccgtgatg
ctgtcgaatttttgaaatatgtattcaacaagttggatgtcatgtactatctcaatgagc
atcgcctttacaaaccggttttcgtcgcacttgtttgcgtgagaaaagaattgtggggtc
gcggaattggtacgacattgatgaatcatgtcaagtctgcagctcgaacagacagtagcg
atggattgatcagtttgtgcagtaatgagcgaggacataaattgatgaagacttattgcc
caactgatttcgctgctgttcgttacgatgctttcaaaggagaacatcttcgtccaccaa
tcgtgatgcgtccaccagaaacattcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACAGTGATGCTCCGCGATCTGGT 350 639 164 Antisense
GCGATCTGGTTCAGGACAGTCTTCA 530 289 179 Antisense
AGTCTTCAATGCTCATCAACGTGTG 71 61 196 Antisense
GTCATTCGTGACGTCACTACTCGTC 211 467 220 Antisense
TCGACGGAATCGCTTTGGCTTGCAA 203 601 248 Antisense
AGAACAACGTGTCCGTGATGCTGTC 350 73 324 Antisense
CAATGAGCATCGCCTTTACAAACCG 551 179 396 Antisense
GGTTTTCGTCGCACTTGTTTGCGTG 32 489 420 Antisense
GCTGCTGTTCGTTACGATGCTTTCA 358 297 595 Antisense
ACATCTTCGTCCACCAATCGTGATG 706 105 627 Antisense
GTGATGCGTCCACCAGAAACATTCC 28 485 646 Antisense
Sequence Source Affymetrix Proprietary Database