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[186866_at]

Description C07A9.7 /REP_DB=WormBase Gene ID /WP=CE00498 /TR=SW:P34318 /GB=CAA82336.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 84      6grp_total > 78      4grp_total > 39      6grp_highest_sub > Da      6grp_high1_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 357
1 2 3 4 range
A 652.8
(3)
P 		337.2
(-3)
P 		388.5
(-2)
P 		418.7
(-1.5)
P 		316
B 631.5
(3)
P 		361.2
(-2.1)
P 		310.8
(-3)
P 		390.4
(-1.5)
P 		321
C 667.4
(3)
P 		329.9
(-3)
P 		347.4
(-2.7)
P 		442.5
(-1)
P 		338
avr 650.6
(3) 		342.8
(-3) 		348.9
(-2.9) 		417.2
(-1.5) 		308

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 521
1 2 3 4 5 6 range
A 560.1
(-1.2)
P 		503.4
(-2.2)
P 		461.6
(-3)
P 		551.3
(-1.4)
P 		674.7
(0.8)
P 		794.7
(3)
P 		333
B 576.8
(-1.1)
P 		489.1
(-2.1)
P 		412
(-3)
P 		532.6
(-1.6)
P 		696.8
(0.3)
P 		932.5
(3)
P 		521
C 509.1
(-2.5)
P 		547.9
(-1.9)
P 		471.1
(-3)
P 		531.7
(-2.2)
P 		568.9
(-1.7)
P 		908.3
(3)
P 		437
avr 548.7
(-1.6) 		513.5
(-2.1) 		448.2
(-3) 		538.5
(-1.7) 		646.8
(-0.2) 		878.5
(3) 		430
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 237.7
(3)
P 		73.2
(-2.6)
P 		101.6
(-1.6)
P 		61.3
(-3)
P 		176
B 201.4
(3)
P 		89.2
(-2.2)
P 		72
(-3)
P 		83.2
(-2.5)
P 		129
C 220.9
(3)
P 		94.8
(-2.2)
P 		121.1
(-1.1)
P 		74.6
(-3)
P 		146
avr 220
(3) 		85.7
(-2.5) 		98.2
(-2) 		73
(-3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 103.3
(-2.8)
P 		179
(1.6)
P 		100.5
(-3)
P 		139.8
(-0.7)
P 		203.6
(3)
P 		193.5
(2.4)
P 		103
B 200.7
(-0.6)
P 		162.8
(-1.5)
P 		100.1
(-3)
P 		141.1
(-2)
P 		283.1
(1.4)
P 		347.7
(3)
P 		248
C 188.7
(-0.5)
P 		167.2
(-1.2)
P 		119.9
(-2.6)
P 		106.9
(-3)
P 		184.1
(-0.7)
P 		304.1
(3)
P 		197
avr 164.2
(-1) 		169.7
(-0.8) 		106.8
(-3) 		129.3
(-2.2) 		223.6
(1) 		281.8
(3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186866_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6661
Sequence Type Exemplar sequence
Representative Public ID C07A9.7 NCBI
Target Description C07A9.7 /REP_DB=WormBase Gene ID /WP=CE00498 /TR=SW:P34318 /GB=CAA82336.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181940(10), NM_066742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_181940 NCBI Caenorhabditis elegans C07A9.7b (C07A9.7) mRNA, complete cds. 10/11 None
NM_066742 NCBI Caenorhabditis elegans C07A9.7a (C07A9.7) mRNA, complete cds. 11/11 None
SNAP00000039328 ENSEMBL cdna:SNAP chromosome:CEL140:III:9691135:9694467:-1 11/11 None
GENEFINDER00000039344 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9691135:9694467:-1 11/11 None
C07A9.7b ENSEMBL cdna:known chromosome:CEL140:III:9690958:9694468:-1 gene:C07A9.7 10/11 None
C07A9.7a ENSEMBL cdna:known chromosome:CEL140:III:9690978:9694467:-1 gene:C07A9.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9691130-9694463(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07A9.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD45581 Hypothetical protein C07A9.7b [Caenorhabditis elegans] ref|NP_871669.1| C07A9.7b [Caenorhabditis elegans] 0.0
blast CAA82336 Hypothetical protein C07A9.7a [Caenorhabditis elegans] ref|NP_499143.1| C07A9.7a [Caenorhabditis elegans] sp|P34318|YKT7_CAEEL Hypothetical protein C07A9.7 in chromosome III 0.0
Sequence
Target Sequence 
>C. ELEGANS:186866_AT
gtatcaggattcatttgtcattgcgaatcgtgtttcaaaatgaaaagcttgaaggtactc
gaaaaacccaaaaagtatcctgaaactattgcgacgaatgcaagttgctttaccgacatc
acaagttacactgagaatataccacgtggatcgaaggaacttgagaacttgatcattgca
ttcgctcggagacccgattcagaaacctacacggaattgatttttcaattttggaagaag
tttgtggaaaatgcgaaatttcgtggaatcacttatgatccatatttggtacgtccctat
gtcgagatgacgatacttgcatggaacaaggaggtcggatgcgaaaatgaagaaaaaatg
tcacttttaatagtaactcatcgacttcttcggaattgctatgttgatttacatccactc
tcggagctcgtcgtcaaactcgtcaatgtcgttgccaatcagaatgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTATCAGGATTCATTTGTCATTGCG 491 453 859 Antisense
GTATCCTGAAACTATTGCGACGAAT 384 455 933 Antisense
TGCAAGTTGCTTTACCGACATCACA 433 575 957 Antisense
TGATCATTGCATTCGCTCGGAGACC 460 565 1028 Antisense
GGAGACCCGATTCAGAAACCTACAC 222 511 1046 Antisense
TGATCCATATTTGGTACGTCCCTAT 492 563 1134 Antisense
TGGTACGTCCCTATGTCGAGATGAC 53 3 1145 Antisense
GTAACTCATCGACTTCTTCGGAATT 98 463 1231 Antisense
TTGATTTACATCCACTCTCGGAGCT 656 703 1262 Antisense
TCGTCGTCAAACTCGTCAATGTCGT 445 561 1286 Antisense
AATGTCGTTGCCAATCAGAATGCTG 64 163 1303 Antisense
Sequence Source Affymetrix Proprietary Database