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[186865_at]

Description R07B1.5 /REP_DB=WormBase Gene ID /WP=CE01631 /TR=SW:Q09419 /GB=CAA88542.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 42      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 24.3
(-1.3)
A 		52.2
(3)
A 		40.2
(1.1)
A 		13.7
(-3)
A 		39
B 1.2
(-3)
A 		55.5
(3)
A 		21.8
(-0.7)
A 		10.7
(-2)
A 		54
C 11.4
(-3)
A 		85.3
(3)
P 		31.4
(-1.4)
M 		28.3
(-1.6)
A 		74
avr 12.3
(-3) 		64.3
(3) 		31.1
(-0.8) 		17.6
(-2.4) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 44.1
(1.8)
A 		46.4
(2.1)
P 		53.6
(3)
A 		12
(-2.2)
A 		5.9
(-3)
A 		8
(-2.7)
A 		48
B 17.8
(-1.2)
A 		46
(3)
P 		39.8
(2.1)
A 		5.6
(-3)
A 		9.9
(-2.4)
A 		22.7
(-0.5)
A 		40
C 20.2
(-0.8)
A 		39.9
(1.6)
P 		51.6
(3)
A 		2.2
(-3)
A 		8.7
(-2.2)
A 		4.1
(-2.8)
A 		49
avr 27.4
(-0) 		44.1
(2.4) 		48.3
(3) 		6.6
(-3) 		8.2
(-2.8) 		11.6
(-2.3) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 8.9
(1.5)
A 		11.3
(3)
A 		10.5
(2.5)
A 		2
(-3)
A 		9
B 0.4
(-3)
A 		13.7
(3)
A 		5.1
(-0.9)
A 		2.3
(-2.1)
A 		13
C 3.8
(-3)
A 		24.5
(3)
P 		10.9
(-0.9)
M 		4.8
(-2.7)
A 		21
avr 4.4
(-2.4) 		16.5
(3) 		8.8
(-0.4) 		3
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 8.1
(-0.4)
A 		16.5
(3)
P 		11.7
(1)
A 		3
(-2.5)
A 		1.8
(-3)
A 		1.9
(-3)
A 		15
B 6.2
(-1)
A 		15.3
(3)
P 		9.7
(0.6)
A 		1.5
(-3)
A 		4
(-1.9)
A 		8.5
(0)
A 		14
C 7.5
(0.4)
A 		12.2
(2.6)
P 		13.1
(3)
A 		0.4
(-3)
A 		2.8
(-1.9)
A 		1.4
(-2.5)
A 		13
avr 7.3
(-0.4) 		14.7
(3) 		11.5
(1.5) 		1.6
(-3) 		2.9
(-2.4) 		3.9
(-1.9) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186865_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17186
Sequence Type Exemplar sequence
Representative Public ID R07B1.5 NCBI
Target Description R07B1.5 /REP_DB=WormBase Gene ID /WP=CE01631 /TR=SW:Q09419 /GB=CAA88542.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077252(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077252 NCBI Caenorhabditis elegans R07B1.5 (R07B1.5) mRNA, complete cds. 11/11 None
SNAP00000020691 ENSEMBL cdna:SNAP chromosome:CEL140:X:9865018:9866296:1 11/11 None
GENEFINDER00000020705 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9865018:9866296:1 11/11 None
R07B1.5 ENSEMBL cdna:known chromosome:CEL140:X:9865018:9866296:1 gene:R07B1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9865017-9866296(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07B1.5
Entrez Gene 187646 Entrez gene
SwissProt Q09419 EMBL-EBI
WormBase CE01631 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88542 Hypothetical protein R07B1.5 [Caenorhabditis elegans] ref|NP_509653.1| R07B1.5 [Caenorhabditis elegans] sp|Q09419|YRN5_CAEEL Hypothetical protein R07B1.5 in chromosome X precursor 2.0E-50
blast CAA88543 Hypothetical protein R07B1.6 [Caenorhabditis elegans] ref|NP_509654.1| R07B1.6 [Caenorhabditis elegans] sp|Q09420|YRN6_CAEEL Hypothetical protein R07B1.6 in chromosome X 1.0E-43
blast CAE58724 Hypothetical protein CBG01909 [Caenorhabditis briggsae] 6.0E-35
Protein Domains
Database ID Description E-Value
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 9.6E-28
Sequence
Target Sequence 
>C. ELEGANS:186865_AT
gaactactttcattagcaatcctgagctctttctttgctgttgctaatcaatgtgccgca
acaagtcctgttacatctccaaccaccactaccactgaagcatcggtaacaactacgatt
gcgactagtacaagcacaacaacagtaactactacaacgactgtagtgactgcagcatgt
gcaacatgcacaactgcccagattggaattatcactggtaatgatggagatatgacacca
acttctgccatcacaacggatgccagtggatgttcagtaatcacctacacatgtgaacgg
actccgaatgttgaaaccgatattgtgctcattactttctacagtgatagccaaactcca
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTACTTTCATTAGCAATCCTGA 575 349 16 Antisense
TGAGCTCTTTCTTTGCTGTTGCTAA 379 569 38 Antisense
TGCTGTTGCTAATCAATGTGCCGCA 428 581 51 Antisense
ATGTGCCGCAACAAGTCCTGTTACA 581 49 66 Antisense
GACTGTAGTGACTGCAGCATGTGCA 77 375 174 Antisense
GCAACATGCACAACTGCCCAGATTG 447 319 196 Antisense
ACTTCTGCCATCACAACGGATGCCA 186 103 256 Antisense
GTGGATGTTCAGTAATCACCTACAC 584 489 281 Antisense
CCTACACATGTGAACGGACTCCGAA 492 267 299 Antisense
GATATTGTGCTCATTACTTTCTACA 488 427 334 Antisense
TCTACAGTGATAGCCAAACTCCAAC 672 613 353 Antisense
Sequence Source Affymetrix Proprietary Database