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[186864_s_at]

Description Y55F3AM.6 /REP_DB=WormBase Gene ID /WP=CE25488 /TR=Q9N373 /GB=AAF60798.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      6grp_total > 68      4grp_total > 01      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 51.1
(-2.7)
P 		41.8
(-3)
A 		69.4
(-2)
P 		202.1
(3)
P 		160
B 74.5
(-1.1)
P 		42.5
(-3)
A 		71.2
(-1.3)
A 		141.5
(3)
P 		99
C 68.9
(-1.4)
P 		36.2
(-3)
A 		51.2
(-2.3)
P 		160.6
(3)
P 		124
avr 64.8
(-1.8) 		40.2
(-3) 		63.9
(-1.9) 		168.1
(3) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 89.4
(2)
A 		56.2
(-2.9)
A 		68.3
(-1.1)
P 		55.4
(-3)
A 		78.1
(0.3)
P 		96.1
(3)
P 		41
B 69.4
(-2.8)
P 		77.3
(-2.1)
P 		79.3
(-1.9)
P 		67.2
(-3)
P 		81.4
(-1.7)
P 		132.3
(3)
P 		65
C 53
(-3)
P 		106.6
(0.2)
P 		53.9
(-2.9)
A 		56.6
(-2.8)
P 		78.3
(-1.5)
P 		153
(3)
P 		100
avr 70.6
(-2) 		80
(-1.2) 		67.2
(-2.3) 		59.7
(-3) 		79.3
(-1.3) 		127.1
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 18.6
(-0.2)
P 		9.1
(-3)
A 		18.2
(-0.3)
P 		29.6
(3)
P 		21
B 23.7
(1)
P 		10.5
(-3)
A 		16.5
(-1.2)
A 		30.2
(3)
P 		20
C 22.8
(1.5)
P 		10.4
(-3)
A 		17.8
(-0.3)
P 		27.1
(3)
P 		17
avr 21.7
(0.7) 		10
(-3) 		17.5
(-0.6) 		29
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 16.5
(-1.5)
A 		20
(0.7)
A 		14.9
(-2.5)
P 		14.1
(-3)
A 		23.6
(3)
P 		23.4
(2.9)
P 		10
B 24.2
(-1.8)
P 		25.7
(-1.5)
P 		19.3
(-2.7)
P 		17.8
(-3)
P 		33.1
(-0.1)
P 		49.3
(3)
P 		32
C 19.7
(-1.7)
P 		32.5
(0.2)
P 		13.7
(-2.7)
A 		11.4
(-3)
P 		25.4
(-0.9)
P 		51.2
(3)
P 		40
avr 20.1
(-1.7) 		26.1
(-0.4) 		16
(-2.6) 		14.4
(-3) 		27.4
(-0.1) 		41.3
(3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186864_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10657
Sequence Type Exemplar sequence
Representative Public ID Y55F3AM.6 NCBI
Target Description Y55F3AM.6 /REP_DB=WormBase Gene ID /WP=CE25488 /TR=Q9N373 /GB=AAF60798.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028339(11), NM_001028340(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028339 NCBI Caenorhabditis elegans Y55F3AM.6a (Y55F3AM.6) mRNA, complete cds. 11/11 None
NM_001028340 NCBI Caenorhabditis elegans Y55F3AM.6b (Y55F3AM.6) mRNA, complete cds. 11/11 None
SNAP00000030047 ENSEMBL cdna:SNAP chromosome:CEL140:IV:988402:1012431:1 11/11 None
Y55F3AM.6a ENSEMBL cdna:known chromosome:CEL140:IV:992289:998416:1 gene:Y55F3AM.6 11/11 A 
Y55F3AM.6b ENSEMBL cdna:known chromosome:CEL140:IV:992292:996084:1 gene:Y55F3AM.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000030075 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:992297-997637(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y55F3AM.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60798 Hypothetical protein Y55F3AM.6a [Caenorhabditis elegans] ref|NP_001023510.1| Y55F3AM.6a [Caenorhabditis elegans] 0.0
blast AAP13746 Hypothetical protein Y55F3AM.6b [Caenorhabditis elegans] ref|NP_001023511.1| Y55F3AM.6b [Caenorhabditis elegans] 0.0
blast AAP13746 Hypothetical protein Y55F3AM.6b [Caenorhabditis elegans] ref|NP_001023511.1| Y55F3AM.6b [Caenorhabditis elegans] 1.0E-164
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.7E-4
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.8E-6
Pfam IPR007135 EMBL-EBI Autophagocytosis associated protein, C-terminal 1.0E-74
Pfam IPR001841 EMBL-EBI Zn-finger, RING 2.8E-6
Sequence
Target Sequence 
>C. ELEGANS:186864_S_AT
aacggatgtcaacactgcttttgcctggattgtatccgtcaatggagatcaaaagatcag
gaaaatgtggaattggcgacaaaaacggttagaagttgtccagaatgtaggcaacactcg
gattatgttataccatcactgttttgggtggaaagtggacaggaaaaggatttattgatt
gaaatgtataaggaaaatacgaaaagaaagatttgcaagtactattcgaacgagcgatcc
cgtggtgcatgtccattcggaaacaaatgcttctataaacatcaacttccagatggttct
attgatcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGGATGTCAACACTGCTTTTGCC 283 143 703 Antisense
ACTGCTTTTGCCTGGATTGTATCCG 224 97 716 Antisense
GCCTGGATTGTATCCGTCAATGGAG 41 283 725 Antisense
TGTCCAGAATGTAGGCAACACTCGG 404 557 799 Antisense
CACTCGGATTATGTTATACCATCAC 386 197 817 Antisense
ATACCATCACTGTTTTGGGTGGAAA 633 21 832 Antisense
AAGATTTGCAAGTACTATTCGAACG 587 155 910 Antisense
TATTCGAACGAGCGATCCCGTGGTG 274 663 925 Antisense
CCCGTGGTGCATGTCCATTCGGAAA 135 261 941 Antisense
TGCTTCTATAAACATCAACTTCCAG 570 577 970 Antisense
ACTTCCAGATGGTTCTATTGATCCT 621 103 987 Antisense
Sequence Source Affymetrix Proprietary Database