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[186862_at]

Description Y51H7BR.3 /REP_DB=WormBase Gene ID /WP=CE25372 /TR=Q9N3J8 /GB=AAF60746.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 90      6grp_total > 02      4grp_total > 12      6grp_highest_sub > 02      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 198.5
(-0.6)
P 		125.7
(-3)
P 		141.5
(-2.5)
P 		311.2
(3)
P 		186
B 227.1
(-0.2)
P 		139
(-2.8)
P 		132.9
(-3)
P 		335.8
(3)
P 		203
C 219
(-1.1)
P 		209.3
(-1.3)
P 		141.4
(-3)
P 		385.5
(3)
P 		244
avr 214.9
(-0.8) 		158
(-2.4) 		138.6
(-3) 		344.2
(3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 222.3
(3)
P 		182
(0.9)
P 		175.1
(0.6)
P 		155
(-0.4)
P 		197.8
(1.8)
P 		104.5
(-3)
P 		118
B 155.2
(-3)
P 		232.8
(3)
P 		169.7
(-1.9)
P 		172.9
(-1.6)
P 		177
(-1.3)
P 		178
(-1.2)
P 		78
C 208.2
(1.2)
P 		240.4
(3)
P 		131.8
(-3)
P 		180.5
(-0.3)
P 		174.9
(-0.6)
P 		142.9
(-2.4)
P 		109
avr 195.2
(1.2) 		218.4
(3) 		158.9
(-1.7) 		169.5
(-0.8) 		183.2
(0.2) 		141.8
(-3) 		77
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 72.3
(3)
P 		27.3
(-3)
P 		37
(-1.7)
P 		45.6
(-0.6)
P 		45
B 72.4
(3)
P 		34.3
(-2.5)
P 		30.8
(-3)
P 		71.6
(2.9)
P 		42
C 72.5
(3)
P 		60.2
(-0.2)
P 		49.3
(-3)
P 		65
(1.1)
P 		23
avr 72.4
(3) 		40.6
(-2.7) 		39
(-3) 		60.7
(0.9) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 41
(-0.6)
P 		64.7
(3)
P 		38.1
(-1.1)
P 		39.3
(-0.9)
P 		59.7
(2.2)
P 		25.4
(-3)
P 		39
B 54
(-0.9)
P 		77.5
(3)
P 		41.2
(-3)
P 		45.8
(-2.2)
P 		71.9
(2.1)
P 		66.4
(1.2)
P 		36
C 77.2
(3)
P 		73.4
(2.5)
P 		33.5
(-3)
P 		36.3
(-2.6)
P 		56.6
(0.2)
P 		47.8
(-1)
P 		44
avr 57.4
(0.5) 		71.9
(3) 		37.6
(-3) 		40.5
(-2.5) 		62.7
(1.4) 		46.5
(-1.4) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186862_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5448
Sequence Type Exemplar sequence
Representative Public ID Y51H7BR.3 NCBI
Target Description Y51H7BR.3 /REP_DB=WormBase Gene ID /WP=CE25372 /TR=Q9N3J8 /GB=AAF60746.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061587(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061587 NCBI Caenorhabditis elegans Y51H7BR.3 (Y51H7BR.3) mRNA, complete cds. 11/11 None
Y51H7BR.3 ENSEMBL cdna:known chromosome:CEL140:II:1534467:1535169:1 gene:Y51H7BR.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028990 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1534465-1535168(+) 89.57 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7BR.3
Entrez Gene 190168 Entrez gene
SwissProt Q9N3J8 EMBL-EBI
WormBase CE25372 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60746 Hypothetical protein Y51H7BR.3 [Caenorhabditis elegans] ref|NP_493988.1| Y51H7BR.3 [Caenorhabditis elegans] 9.0E-56
blast AAB71020 Hypothetical protein K02E7.11 [Caenorhabditis elegans] ref|NP_493906.1| K02E7.11 [Caenorhabditis elegans] 7.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493988.1 4 17-39,78-100,112-131,135-154
Y51H7BR.3 4 17-39,78-100,112-131,135-154
Sequence
Target Sequence 
>C. ELEGANS:186862_AT
aaatctgctgcctaatttttctcaccttacaactcctgataagcctgtttattctacttg
gcactgtgccagctttgatgaattttgatgttaaatttcaatatgacgctacaaggttat
tacagagtgaggaaaatgcaaaattttcaaaaaaaaatttcaaaattttttttaattcaa
aaaaaaaattaccaatcctgcttttgctacttacaatcacacttttctggttcatctcgt
caattttcgccctgatctttgtgcttcaggacctaaaacgatatcttcgatttcatatct
atttcaattctgtgatcacccttatatacttctgcaagttgatcattcttctggtatccg
gcgacatggtcacatcgattctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTGCTGCCTAATTTTTCTCAC 153 119 50 Antisense
TTTCTCACCTTACAACTCCTGATAA 400 671 67 Antisense
GATAAGCCTGTTTATTCTACTTGGC 299 423 87 Antisense
GGCACTGTGCCAGCTTTGATGAATT 370 535 109 Antisense
ATTACCAATCCTGCTTTTGCTACTT 416 13 237 Antisense
GCTACTTACAATCACACTTTTCTGG 504 301 255 Antisense
CTGGTTCATCTCGTCAATTTTCGCC 354 241 276 Antisense
TGATCTTTGTGCTTCAGGACCTAAA 504 565 302 Antisense
GTGATCACCCTTATATACTTCTGCA 630 483 361 Antisense
TCTGCAAGTTGATCATTCTTCTGGT 260 609 380 Antisense
GGCGACATGGTCACATCGATTCTCT 180 543 409 Antisense
Sequence Source Affymetrix Proprietary Database