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[186860_at]

Description Y59E9AL.5 /REP_DB=WormBase Gene ID /WP=CE22661 /TR=Q9N329 /GB=AAF60819.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.1
(-2.4)
A 		37.9
(3)
A 		8
(-1.9)
A 		1.5
(-3)
A 		36
B 1.6
(-3)
A 		9.5
(3)
A 		6.4
(0.6)
A 		4.2
(-1)
A 		8
C 3.8
(-2.6)
A 		24.7
(3)
A 		2.4
(-3)
A 		6.7
(-1.8)
A 		22
avr 3.5
(-3) 		24
(3) 		5.6
(-2.4) 		4.1
(-2.8) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10.4
(2)
A 		1.6
(-3)
A 		3.9
(-1.7)
A 		12.1
(3)
A 		7.7
(0.5)
A 		8
(0.7)
A 		11
B 4.5
(-0.8)
A 		6
(2.1)
A 		3.3
(-3)
A 		4.9
(0)
A 		6.5
(3)
A 		4.3
(-1.1)
A 		3
C 4.6
(-2.2)
A 		1.7
(-3)
A 		8.9
(-0.9)
A 		22.7
(3)
A 		4.3
(-2.3)
A 		8.9
(-0.9)
A 		21
avr 6.5
(-1) 		3.1
(-3) 		5.4
(-1.6) 		13.2
(3) 		6.2
(-1.2) 		7.1
(-0.6) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.9
(-1.7)
A 		8.2
(3)
A 		2.1
(-1.6)
A 		0.2
(-3)
A 		8
B 0.5
(-3)
A 		2.3
(3)
A 		1.5
(0.3)
A 		0.9
(-1.7)
A 		2
C 1.3
(-2.5)
A 		7.1
(3)
A 		0.8
(-3)
A 		1.1
(-2.7)
A 		6
avr 1.2
(-2.4) 		5.9
(3) 		1.5
(-2.1) 		0.7
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.9
(0.1)
A 		0.6
(-3)
A 		0.8
(-2.5)
A 		3.1
(3)
A 		2.3
(1.1)
A 		2
(0.4)
A 		3
B 1.6
(-0.3)
A 		2
(1)
A 		0.8
(-3)
A 		1.3
(-1.3)
A 		2.6
(3)
A 		1.6
(-0.3)
A 		2
C 1.7
(-1.2)
A 		0.5
(-3)
A 		2.3
(-0.4)
A 		4.6
(3)
A 		1.4
(-1.7)
A 		3
(0.7)
A 		4
avr 1.7
(-0.9) 		1
(-3) 		1.3
(-2.1) 		3
(3) 		2.1
(0.3) 		2.2
(0.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186860_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10699
Sequence Type Exemplar sequence
Representative Public ID Y59E9AL.5 NCBI
Target Description Y59E9AL.5 /REP_DB=WormBase Gene ID /WP=CE22661 /TR=Q9N329 /GB=AAF60819.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068343(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068343 NCBI Caenorhabditis elegans Y59E9AL.5 (Y59E9AL.5) mRNA, complete cds. 11/11 None
Y59E9AL.5 ENSEMBL cdna:known chromosome:CEL140:IV:5221874:5222222:-1 gene:Y59E9AL.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011358 7/11 Cross Hyb Matching Probes None
GENEFINDER00000011372 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5221879-5222228(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59E9AL.5
Entrez Gene 190417 Entrez gene
SwissProt Q9N329 EMBL-EBI
WormBase CE22661 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60819 Hypothetical protein Y59E9AL.5 [Caenorhabditis elegans] ref|NP_500744.1| Y59E9AL.5 [Caenorhabditis elegans] 4.0E-37
Sequence
Target Sequence 
>C. ELEGANS:186860_AT
caaaaatcagtacgaatcttcatattcgatacaaaacatcgtataaacgataccaagcga
caagaagacgatgagccccatggactatctgcacttcattttgcttctcgtcggcccact
tgctgtgcttgttggatgcggaggaaaaaagaaagcaccaccaccaaagtctgcgtccaa
gatgactgcaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAAATCAGTACGAATCTTCATAT 398 191 43 Antisense
ATCTTCATATTCGATACAAAACATC 132 31 58 Antisense
GTATAAACGATACCAAGCGACAAGA 633 453 83 Antisense
GATACCAAGCGACAAGAAGACGATG 325 425 91 Antisense
CCCATGGACTATCTGCACTTCATTT 646 257 119 Antisense
GACTATCTGCACTTCATTTTGCTTC 299 373 125 Antisense
TATCTGCACTTCATTTTGCTTCTCG 353 659 128 Antisense
CCCACTTGCTGTGCTTGTTGGATGC 533 257 157 Antisense
TGCTGTGCTTGTTGGATGCGGAGGA 646 581 163 Antisense
CCACCAAAGTCTGCGTCCAAGATGA 248 273 203 Antisense
TCTGCGTCCAAGATGACTGCACCAC 383 609 212 Antisense
Sequence Source Affymetrix Proprietary Database