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[186859_at]

Description C05B5.2 /REP_DB=WormBase Gene ID /WP=CE00878 /TR=SW:P34290 /GB=CAA83592.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 10      6grp_total > 03      4grp_total > 08      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 115.2
(-1.5)
A 		107
(-2.7)
A 		105.2
(-3)
M 		145.4
(3)
P 		40
B 56.1
(-3)
A 		93
(2.1)
A 		99.2
(3)
A 		97.4
(2.7)
A 		43
C 118.8
(1.3)
P 		84.6
(-3)
A 		105.1
(-0.4)
A 		132.8
(3)
P 		48
avr 96.7
(-2.6) 		94.9
(-3) 		103.2
(-1.4) 		125.2
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 107.8
(-0)
A 		88.8
(-2.1)
P 		112.8
(0.5)
P 		136.1
(3)
P 		90.5
(-1.9)
P 		80.1
(-3)
P 		56
B 142.6
(3)
P 		127.3
(2)
P 		80.9
(-1)
A 		91.9
(-0.3)
P 		115.9
(1.3)
P 		50.1
(-3)
A 		93
C 98.9
(-3)
P 		115.5
(-0.3)
A 		111.9
(-0.8)
P 		135.5
(3)
A 		98.6
(-3)
P 		99.2
(-2.9)
A 		37
avr 116.4
(2.4) 		110.5
(1.6) 		101.9
(0.4) 		121.2
(3) 		101.7
(0.4) 		76.5
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 41.9
(3)
A 		23.2
(-2.4)
A 		27.5
(-1.2)
M 		21.3
(-3)
P 		21
B 17.9
(-3)
A 		23
(3)
A 		23
(3)
A 		20.7
(0.3)
A 		5
C 39.3
(3)
P 		24.3
(-2.3)
A 		36.6
(2)
A 		22.4
(-3)
P 		17
avr 33
(3) 		23.5
(-2) 		29
(0.9) 		21.5
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 19.9
(-2.8)
A 		31.6
(1.8)
P 		24.6
(-1)
P 		34.5
(3)
P 		27.3
(0.1)
P 		19.5
(-3)
P 		15
B 49.6
(3)
P 		42.4
(1.6)
P 		19.6
(-2.8)
A 		24.3
(-1.9)
P 		47.1
(2.5)
P 		18.7
(-3)
A 		31
C 36.7
(3)
P 		35.3
(2.1)
A 		28.5
(-2.2)
P 		27.2
(-3)
A 		31.9
(-0)
P 		33.2
(0.8)
A 		10
avr 35.4
(2.5) 		36.4
(3) 		24.2
(-2.8) 		28.7
(-0.7) 		35.4
(2.5) 		23.8
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186859_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7370
Sequence Type Exemplar sequence
Representative Public ID C05B5.2 NCBI
Target Description C05B5.2 /REP_DB=WormBase Gene ID /WP=CE00878 /TR=SW:P34290 /GB=CAA83592.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066817(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066817 NCBI Caenorhabditis elegans C05B5.2 (C05B5.2) mRNA, complete cds. 11/11 None
GENEFINDER00000026768 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9998433:9999226:-1 10/11 None
C05B5.2 ENSEMBL cdna:known chromosome:CEL140:III:9998433:10000355:-1 gene:C05B5.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026742 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9998428-10000351(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05B5.2
Entrez Gene 176412 Entrez gene
SwissProt P34290 EMBL-EBI
WormBase CE00878 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83592 Hypothetical protein C05B5.2 [Caenorhabditis elegans] ref|NP_499218.1| C05B5.2 [Caenorhabditis elegans] sp|P34290|YKO2_CAEEL Hypothetical protein C05B5.2 in chromosome III 0.0
blast S43571 C05B5.2 protein (clone C05B5) - Caenorhabditis elegans 1.0E-179
blast CAA83592 Hypothetical protein C05B5.2 [Caenorhabditis elegans] ref|NP_499218.1| C05B5.2 [Caenorhabditis elegans] sp|P34290|YKO2_CAEEL Hypothetical protein C05B5.2 in chromosome III 2.0E-77
blast S43571 C05B5.2 protein (clone C05B5) - Caenorhabditis elegans 2.0E-77
blast NP_494869 C33F10.1 [Caenorhabditis elegans] gb|AAK31473.2| Hypothetical protein C33F10.1 [Caenorhabditis elegans] 3.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499218.1 5 106-128,172-191,206-224,229-251,261-280
C05B5.2 5 106-128,172-191,206-224,229-251,261-280
GENEFINDER00000026768 3 10-32,34-53,63-82
Sequence
Target Sequence 
>C. ELEGANS:186859_AT
ctcacgaagccacctgttgcaagaagaatgacttttctcaaacttgcaattcaagtactt
cgcataccatttttgttcttcattgcatttcgtgccttcatcatcccgaaattcattttt
cttgaaactggatcgtatgttgctacaggactcttttcggcttttcatcttacaattctc
tggattcatatgaacccgaaatccctgaagtctttgtactacgcatacattgcattaact
gtgctcatgttgacgggatggttcgatttcgttttcagaaaacattgtttcctcaaaaag
tacggattcctcgttgccatgggaatagctggaaatgttccgaactctcgcgaagtcaca
atgattattgaattggatatgcttagtttgactttaacccttgtcctgttgtacctgcaa
ctgaagaaaagtgtagctgaagagttcgtgttccccaagcaaccaaaaaagtcaatccga
ggaccagtctgcttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCACGAAGCCACCTGTTGCAAGAA 103 223 580 Antisense
ACTTCGCATACCATTTTTGTTCTTC 3 103 636 Antisense
TCATTGCATTTCGTGCCTTCATCAT 359 619 659 Antisense
TGTTGCTACAGGACTCTTTTCGGCT 710 561 717 Antisense
TTCGGCTTTTCATCTTACAATTCTC 358 695 735 Antisense
ATGAACCCGAAATCCCTGAAGTCTT 674 43 769 Antisense
AAAGTACGGATTCCTCGTTGCCATG 658 121 876 Antisense
TGTTCCGAACTCTCGCGAAGTCACA 210 563 915 Antisense
TGACTTTAACCCTTGTCCTGTTGTA 691 427 968 Antisense
GTAGCTGAAGAGTTCGTGTTCCCCA 197 457 1012 Antisense
TCAATCCGAGGACCAGTCTGCTTCA 93 633 1051 Antisense
Sequence Source Affymetrix Proprietary Database