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[186858_at]

Description C50H11.11 /REP_DB=WormBase Gene ID /WP=CE08927 /TR=O16471 /GB=AAG23998.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 29      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 24.3
(-0.8)
A 		6.3
(-3)
A 		7.9
(-2.8)
A 		55.8
(3)
A 		50
B 27.9
(-2.1)
A 		24.6
(-3)
A 		46.2
(3)
A 		38.7
(0.9)
A 		22
C 50.6
(2.4)
A 		55.8
(3)
A 		7
(-3)
A 		14.6
(-2.1)
A 		49
avr 34.3
(2.2) 		28.9
(0.2) 		20.4
(-3) 		36.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 19.5
(1.8)
A 		23.9
(3)
A 		8.1
(-1.3)
A 		2
(-3)
A 		16.5
(1)
A 		5.9
(-1.9)
A 		22
B 8.4
(-2.2)
A 		5.1
(-2.6)
A 		47.8
(3)
A 		8.4
(-2.2)
A 		11
(-1.8)
A 		2.1
(-3)
A 		46
C 4.9
(-3)
A 		47.1
(3)
A 		19.3
(-1)
A 		35
(1.3)
A 		20
(-0.9)
A 		5.4
(-2.9)
A 		42
avr 10.9
(-1.2) 		25.4
(3) 		25.1
(2.9) 		15.1
(0) 		15.8
(0.2) 		4.5
(-3) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 8.8
(3)
A 		1.4
(-3)
A 		2.1
(-2.4)
A 		8.2
(2.5)
A 		7
B 8.9
(0.7)
A 		6.1
(-3)
A 		10.7
(3)
A 		8.2
(-0.3)
A 		5
C 16.7
(3)
A 		16
(2.7)
A 		2.4
(-3)
A 		2.5
(-3)
A 		14
avr 11.5
(3) 		7.8
(-0.5) 		5.1
(-3) 		6.3
(-1.9) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.6
(-0.7)
A 		8.5
(3)
A 		1.8
(-2)
A 		0.5
(-3)
A 		5
(0.4)
A 		1.4
(-2.3)
A 		8
B 2.9
(-1.8)
A 		1.7
(-2.5)
A 		11.6
(3)
A 		2.2
(-2.2)
A 		4.5
(-0.9)
A 		0.8
(-3)
A 		11
C 1.8
(-3)
A 		14.4
(3)
A 		4.9
(-1.5)
A 		7
(-0.5)
A 		6.5
(-0.8)
A 		1.8
(-3)
A 		13
avr 2.8
(-1.7) 		8.2
(3) 		6.1
(1.2) 		3.2
(-1.3) 		5.3
(0.5) 		1.3
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186858_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15903
Sequence Type Exemplar sequence
Representative Public ID C50H11.11 NCBI
Target Description C50H11.11 /REP_DB=WormBase Gene ID /WP=CE08927 /TR=O16471 /GB=AAG23998.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071434
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043572 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3062720:3064744:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071434 7/11 Cross Hyb Matching Probes None
SNAP00000043560 8/11 Cross Hyb Matching Probes None
C50H11.11 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3062719-3064744(-) 83.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503835 Serpentine Receptor, class T family member (srt-16) [Caenorhabditis elegans] gb|AAG23998.3| Serpentine receptor, class t protein 16 [Caenorhabditis elegans] 1.0E-167
blast NP_505332 Serpentine Receptor, class T family member (srt-18) [Caenorhabditis elegans] gb|AAC48103.2| Serpentine receptor, class t protein 18 [Caenorhabditis elegans] 2.0E-89
blast AAG24122 Serpentine receptor, class t protein 17 [Caenorhabditis elegans] ref|NP_503268.1| Serpentine Receptor, class T family member (srt-17) [Caenorhabditis elegans] 2.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 2.1E-106
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000043572 7 51-73,86-108,123-145,166-188,208-230,251-273,283-305
Sequence
Target Sequence 
>C. ELEGANS:186858_AT
ttgccgaatttaccattgccgcacacctcaacgatttgacaatacaattttgaccaaaac
tattgatttttttcccagaaatttaccgtcaatctacataagtaccattcattatttcaa
caacttctcagtaatcatttgcaccgtcctattctacggatacattgcatatgtttatct
gaaagaatctcgatcaattgcgtcgaaacaattgtcaaaatctcaaatttcggtaatact
ccttcaatcatttttcttttgcttttttcacgttataaccgcaattgcatacattgcaat
ggaatttttatcagcgtccgattttttgacacttcttgggcttttgggatggcagtggag
tagtggatctgtgtgcattgtgtacttgacgctgaacaagacaattagacaagcagtgaa
gaagcttttgtgttcgaatgtttcaaattctgttggacttgccacattcggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCGAATTTACCATTGCCGCACA 700 699 672 Antisense
CCGCACACCTCAACGATTTGACAAT 179 263 690 Antisense
ATTCATTATTTCAACAACTTCTCAG 629 11 778 Antisense
ACTTCTCAGTAATCATTTGCACCGT 605 103 794 Antisense
TTTGCACCGTCCTATTCTACGGATA 224 669 809 Antisense
TTTCGGTAATACTCCTTCAATCATT 422 671 899 Antisense
GCTTTTTTCACGTTATAACCGCAAT 512 303 932 Antisense
TATCAGCGTCCGATTTTTTGACACT 633 657 980 Antisense
TTGACACTTCTTGGGCTTTTGGGAT 229 703 997 Antisense
GTGTGCATTGTGTACTTGACGCTGA 707 487 1042 Antisense
TTCTGTTGGACTTGCCACATTCGGG 377 693 1119 Antisense
Sequence Source Affymetrix Proprietary Database