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[186856_at]

Description C04E12.10 /REP_DB=WormBase Gene ID /WP=CE16823 /TR=O76682 /GB=AAC27095.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 02      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 3.5
(-3)
A 		3.4
(-3)
A 		5.1
(-2.8)
A 		64.1
(3)
A 		61
B 5.6
(-2.7)
A 		9.3
(-1.4)
A 		4.6
(-3)
A 		22
(3)
A 		17
C 6.8
(-2.6)
A 		7.6
(-2.5)
A 		1.3
(-3)
A 		78.3
(3)
A 		77
avr 5.3
(-2.8) 		6.8
(-2.6) 		3.7
(-3) 		54.8
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 3.2
(-0.8)
A 		3.3
(-0.5)
A 		4.1
(1.6)
A 		2.4
(-3)
A 		4.6
(3)
A 		2.5
(-2.7)
A 		2
B 2.5
(-2.5)
A 		9.8
(0.7)
A 		7.2
(-0.4)
A 		1.3
(-3)
A 		15.1
(3)
A 		2.7
(-2.4)
A 		14
C 2.3
(-2.8)
A 		13.5
(3)
A 		2.5
(-2.7)
A 		3.2
(-2.4)
A 		2
(-3)
A 		2.6
(-2.7)
A 		12
avr 2.7
(-2.6) 		8.9
(3) 		4.6
(-0.9) 		2.3
(-3) 		7.2
(1.5) 		2.6
(-2.7) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 1.3
(-2.6)
A 		0.7
(-3)
A 		1.3
(-2.6)
A 		9.4
(3)
A 		9
B 1.8
(-1.8)
A 		2.3
(-1)
A 		1.1
(-3)
A 		4.7
(3)
A 		4
C 2.3
(-2.1)
A 		2.2
(-2.2)
A 		0.5
(-3)
A 		13.2
(3)
A 		13
avr 1.8
(-2.4) 		1.7
(-2.5) 		1
(-3) 		9.1
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.6
(-3)
A 		1.2
(1.5)
A 		0.9
(-0.8)
A 		0.6
(-3)
A 		1.4
(3)
A 		0.6
(-3)
A 		1
B 0.9
(-2.4)
A 		3.3
(0.1)
A 		1.7
(-1.6)
A 		0.3
(-3)
A 		6.1
(3)
A 		1
(-2.3)
A 		6
C 0.9
(-2.5)
A 		4.1
(3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.6
(-3)
A 		0.9
(-2.5)
A 		4
avr 0.8
(-2.3) 		2.9
(3) 		1.1
(-1.5) 		0.5
(-3) 		2.7
(2.5) 		0.8
(-2.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186856_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15914
Sequence Type Exemplar sequence
Representative Public ID C04E12.10 NCBI
Target Description C04E12.10 /REP_DB=WormBase Gene ID /WP=CE16823 /TR=O76682 /GB=AAC27095.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071540(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071540 NCBI Caenorhabditis elegans C04E12.10 (C04E12.10) mRNA, complete cds. 11/11 None
SNAP00000029755 ENSEMBL cdna:SNAP chromosome:CEL140:V:3377424:3382106:-1 11/11 None
GENEFINDER00000029763 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3377424:3382676:-1 11/11 None
C04E12.10 ENSEMBL cdna:known chromosome:CEL140:V:3377424:3381750:-1 gene:C04E12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3377423-3381750(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C04E12.10
Entrez Gene 182215 Entrez gene
SwissProt O76682 EMBL-EBI
WormBase CE16823 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC27095 Hypothetical protein C04E12.10 [Caenorhabditis elegans] ref|NP_503941.1| C04E12.10 [Caenorhabditis elegans] 0.0
blast AAC04399 Hypothetical protein C17B7.5 [Caenorhabditis elegans] ref|NP_503925.1| C17B7.5 [Caenorhabditis elegans] 0.0
blast AAF99935 Hypothetical protein F35F10.10 [Caenorhabditis elegans] ref|NP_503914.1| F35F10.10 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.7E-41
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.0E-46
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.9E-7
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.7E-41
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.9E-32
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.9E-7
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 7.7E-41
Pfam IPR006588 EMBL-EBI Protein of unknown function PAW 3.0E-46
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029763 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:186856_AT
actacttcaccttcaactttaaatgacactgaatccaatcaagatgtagtctcaacgcca
ttattaacttggcgggaagagcatatcgctttgggaccaatgtcaaaagaaaatcatgtg
aaatttacgtacgatgtcacgagtgacacgtattcacacactaagcctaatggatcttca
tatgtaccgtataatgttggcaatattgaacgagtagtggataagcgactgaatcaagtt
tatttacataggaacgattctacaaaatatacttatataagttgggcattcgacaccacg
atcgatgggaaagttgtagacaaattgacaattaaagtaagcggaatggaagaatgtgct
tggggaggtacattagaaatttgtcgaatttatggatacgagaagtgcaccgtgattccc
attaacgaaggattgacgattgagtatccacaattatctgttttcaagattggatactac
tactccacgctcagtgatccaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACTTCACCTTCAACTTTAAATG 147 101 1360 Antisense
GTAGTCTCAACGCCATTATTAACTT 212 457 1405 Antisense
TGGCGGGAAGAGCATATCGCTTTGG 391 541 1429 Antisense
GAAATTTACGTACGATGTCACGAGT 272 363 1479 Antisense
TGTCACGAGTGACACGTATTCACAC 137 559 1494 Antisense
GTATTCACACACTAAGCCTAATGGA 229 453 1509 Antisense
AAGTTGGGCATTCGACACCACGATC 220 151 1638 Antisense
GCATTCGACACCACGATCGATGGGA 362 305 1645 Antisense
GAAGTGCACCGTGATTCCCATTAAC 617 335 1761 Antisense
GAGTATCCACAATTATCTGTTTTCA 482 399 1801 Antisense
CTACTCCACGCTCAGTGATCCAAAA 481 225 1839 Antisense
Sequence Source Affymetrix Proprietary Database