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[186855_at] 7TM chemoreceptor, srj family

Description Y45G12A.1 /REP_DB=WormBase Gene ID /WP=CE21932 /TR=Q9N4Z1 /GB=AAF60573.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 60      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 60.5
(3)
A 		15.1
(-3)
A 		52.4
(1.9)
A 		14.9
(-3)
A 		46
B 41.2
(-0.9)
A 		54.6
(0.3)
A 		86.7
(3)
A 		16.1
(-3)
A 		71
C 50.4
(2.1)
A 		56.7
(3)
A 		43.1
(1.2)
A 		12.4
(-3)
A 		44
avr 50.7
(1.7) 		42.1
(0.6) 		60.7
(3) 		14.5
(-3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 38.3
(-3)
A 		68
(2.9)
A 		66
(2.5)
A 		63.9
(2.1)
A 		68.7
(3)
A 		62.9
(1.9)
A 		30
B 56.2
(0.1)
A 		75
(3)
A 		44.3
(-1.8)
A 		61.2
(0.8)
A 		49.9
(-0.9)
A 		36.7
(-3)
A 		38
C 82.5
(1.8)
A 		60.4
(-0.2)
A 		52.5
(-0.9)
A 		96.4
(3)
A 		28.4
(-3)
A 		50.8
(-1)
A 		68
avr 59
(-0.6) 		67.8
(1.5) 		54.3
(-1.7) 		73.8
(3) 		49
(-3) 		50.1
(-2.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22
(3)
A 		3.3
(-2.7)
A 		13.7
(0.5)
A 		2.2
(-3)
A 		20
B 13.1
(0.5)
A 		13.5
(0.6)
A 		20.1
(3)
A 		3.4
(-3)
A 		17
C 16.7
(3)
A 		16.3
(2.8)
A 		15
(2.3)
A 		2.1
(-3)
A 		15
avr 17.3
(3) 		11
(0.4) 		16.3
(2.6) 		2.6
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 7.1
(-3)
A 		24.2
(3)
A 		14.4
(-0.4)
A 		16.2
(0.2)
A 		20.7
(1.8)
A 		15.3
(-0.1)
A 		17
B 19.5
(0.7)
A 		25
(3)
A 		10.8
(-3)
A 		16.2
(-0.7)
A 		20.3
(1)
A 		13.7
(-1.8)
A 		14
C 30.6
(3)
A 		18.4
(-0.4)
A 		13.4
(-1.8)
A 		19.4
(-0.1)
A 		9.2
(-3)
A 		17
(-0.8)
A 		21
avr 19.1
(0.9) 		22.5
(3) 		12.9
(-3) 		17.3
(-0.3) 		16.7
(-0.6) 		15.3
(-1.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186855_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15918
Sequence Type Exemplar sequence
Representative Public ID Y45G12A.1 NCBI
Target Description Y45G12A.1 /REP_DB=WormBase Gene ID /WP=CE21932 /TR=Q9N4Z1 /GB=AAF60573.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071372 NCBI Caenorhabditis elegans Serpentine Receptor, class J family member (srj-55) (srj-55) mRNA, complete cds. 11/11 None
Y45G12A.1 ENSEMBL cdna:known chromosome:CEL140:V:2855909:2857778:-1 gene:Y45G12A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000001654 8/11 Cross Hyb Matching Probes None
GENEFINDER00000001655 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2855908-2857778(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srj family
Gene Symbol srj-55
Ensembl Y45G12A.1
Entrez Gene 189930 Entrez gene
SwissProt Q9N4Z1 EMBL-EBI
WormBase CE38241 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503773 Serpentine Receptor, class J family member (srj-55) [Caenorhabditis elegans] gb|AAF60573.2| Serpentine receptor, class j protein 55 [Caenorhabditis elegans] 0.0
blast NP_503772 Serpentine Receptor, class J family member (srj-57) [Caenorhabditis elegans] gb|AAG24190.1| Serpentine receptor, class j protein 57 [Caenorhabditis elegans] 1.0E-149
blast AAK18951 Serpentine receptor, class j protein 54 [Caenorhabditis elegans] ref|NP_503774.1| Serpentine Receptor, class J family member (srj-54) [Caenorhabditis elegans] 1.0E-136
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503773.2 7 5-30,43-65,91-113,126-148,194-216,246-268,283-305
Y45G12A.1 7 10-32,45-64,94-116,129-151,197-219,249-271,286-308
Sequence
Target Sequence 
>C. ELEGANS:186855_AT
ccatatcggcggtcgtttttgtcgtgtactttgcgacgtggtatgcgatttgttacttcc
ctggacgagcgaatgtggaaatcaaagagtatattcgcaaagattttttcgagatttatg
gcaccgactcaatggattacaacatgctcggagcattgtttcacgatggatcaaatgaaa
ctgtttacctatcttgggttgccaccatgacgtggaccgcaatatcgacggcatccataa
tagcatttacagtcatgacaagaatgattgttcgaaagctgagaaaaatctcaacaaacg
cgagtaaaaaaacatccaaatttcaatttgagctcttgagagccctaattgtccaaaccg
taatcccgatcttgatcagcttctcgccatgtcttctttgctggtacagtccaatgtttg
gcattccgttggccagagaaatcaactacttggaaatctgtgcttttggagtttttccat
ttgccgatcccgtggcaataatcttgtgccttccagtttttcgaaaacggattttctgtt
cttgcaaaagtgtaccagcatcggtggccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATATCGGCGGTCGTTTTTGTCGT 696 263 416 Antisense
GTGTACTTTGCGACGTGGTATGCGA 43 487 439 Antisense
ATTTGTTACTTCCCTGGACGAGCGA 651 15 463 Antisense
TTTACCTATCTTGGGTTGCCACCAT 415 663 599 Antisense
TTGCCACCATGACGTGGACCGCAAT 192 701 614 Antisense
GGACCGCAATATCGACGGCATCCAT 534 523 629 Antisense
TGAGAGCCCTAATTGTCCAAACCGT 155 559 752 Antisense
AACCGTAATCCCGATCTTGATCAGC 459 147 771 Antisense
TCCATTTGCCGATCCCGTGGCAATA 27 591 891 Antisense
AATAATCTTGTGCCTTCCAGTTTTT 693 171 912 Antisense
AAAAGTGTACCAGCATCGGTGGCCG 381 129 961 Antisense
Sequence Source Affymetrix Proprietary Database