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[186854_s_at]

Description Y59E9AL.4 /REP_DB=WormBase Gene ID /WP=CE25513 /TR=Q9N330 /GB=AAF60824.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 96      4grp_total > 63      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 168
1 2 3 4 range
A 266.3
(3)
P 		183.8
(-3)
P 		227.4
(0.2)
P 		254.4
(2.1)
P 		83
B 262.5
(3)
P 		255.7
(2.4)
P 		192.8
(-3)
P 		233.5
(0.5)
P 		70
C 328.1
(3)
P 		160.3
(-3)
P 		327.6
(3)
P 		199.5
(-1.6)
P 		168
avr 285.6
(3) 		199.9
(-3) 		249.3
(0.5) 		229.1
(-1) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 191.7
(-3)
P 		430.7
(3)
P 		269.6
(-1)
P 		345.7
(0.9)
P 		405.9
(2.4)
P 		425.4
(2.9)
P 		239
B 363.4
(0.1)
P 		245.2
(-3)
P 		269
(-2.4)
P 		322
(-1)
P 		470.5
(3)
P 		453.5
(2.5)
P 		225
C 253.2
(-3)
P 		298.8
(-1.7)
P 		438.7
(2.4)
P 		388.2
(0.9)
P 		356.5
(0)
P 		458.7
(3)
P 		206
avr 269.4
(-3) 		324.9
(-1.1) 		325.8
(-1.1) 		352
(-0.2) 		411
(1.8) 		445.9
(3) 		177
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 96.9
(3)
P 		39.9
(-2.7)
P 		59.4
(-0.8)
P 		37.2
(-3)
P 		60
B 83.7
(3)
P 		63.2
(-0.2)
P 		44.7
(-3)
P 		49.8
(-2.2)
P 		39
C 108.6
(2.6)
P 		46.1
(-2.1)
P 		114.2
(3)
P 		33.6
(-3)
P 		81
avr 96.4
(3) 		49.7
(-2) 		72.8
(0.5) 		40.2
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 35.3
(-3)
P 		153.2
(3)
P 		58.7
(-1.8)
P 		87.7
(-0.3)
P 		122.5
(1.4)
P 		103.6
(0.5)
P 		118
B 126.4
(-0.1)
P 		81.6
(-2.2)
P 		65.3
(-3)
P 		85.3
(-2)
P 		191.2
(3)
P 		169.1
(1.9)
P 		126
C 93.8
(-1.8)
P 		91.2
(-2)
P 		111.7
(-0.3)
P 		78.1
(-3)
P 		115.4
(-0)
P 		153.5
(3)
P 		75
avr 85.2
(-2.4) 		108.7
(-0.2) 		78.6
(-3) 		83.7
(-2.5) 		143
(3) 		142.1
(2.9) 		64
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186854_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11250
Sequence Type Exemplar sequence
Representative Public ID Y59E9AL.4 NCBI
Target Description Y59E9AL.4 /REP_DB=WormBase Gene ID /WP=CE25513 /TR=Q9N330 /GB=AAF60824.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068341(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068341 NCBI Caenorhabditis elegans Y59E9AL.4 (Y59E9AL.4) mRNA, complete cds. 11/11 None
SNAP00000011354 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5207262:5209460:-1 11/11 None
Y59E9AL.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:5207157:5215181:-1 gene:Y59E9AL.4 11/11 None
Y59E9AL.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:5207157:5215183:-1 gene:Y59E9AL.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000011365 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5207371-5215178(-) 96.06 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59E9AL.4
Entrez Gene 177296 Entrez gene
SwissProt Q9N330 EMBL-EBI
WormBase CE25513 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60824 Hypothetical protein Y59E9AL.4 [Caenorhabditis elegans] ref|NP_500742.1| Y59E9AL.4 [Caenorhabditis elegans] 0.0
blast CAE72821 Hypothetical protein CBG20102 [Caenorhabditis briggsae] 0.0
blast AAF60824 Hypothetical protein Y59E9AL.4 [Caenorhabditis elegans] ref|NP_500742.1| Y59E9AL.4 [Caenorhabditis elegans] 1.0E-168
blast CAE63817 Hypothetical protein CBG08367 [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.7E-8
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 1.8E-69
Pfam IPR006043 EMBL-EBI Xanthine/uracil/vitamin C permease family 3.5E-28
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 2.7E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500742.1 10 20-42,55-77,122-141,148-170,174-196,217-239,279-301,351-373,393-415,422-444
Y59E9AL.4.2 10 20-42,55-77,122-141,148-170,174-196,217-239,279-301,351-373,393-415,422-444
Y59E9AL.4.1 10 20-42,55-77,122-141,148-170,174-196,217-239,279-301,351-373,393-415,422-444
Sequence
Target Sequence 
>C. ELEGANS:186854_S_AT
gttgattctgattcagctgctgcaatggttcgggattttattgttaacgatccatccata
aaatatcaaaaacacgaaaaacgtaaaaaagaagcggaattagttcgtcgacaggaggaa
aacgaagaagaagaaattccagatattctgagccctggagaaatcgacgatctggaaccg
ccagttgtgccccaggaatttccgccgcgactcaggccattcgtcgaactttacatgaca
aagaatctgcattctccccgtcgacttctatcccatcatgctcaactggtcgtgctcctc
ctccaacttcacctgaagacgaagccccttcgacttccgaaagtctacaaaatccaattc
cataccacatcaatattgagcgatcacgaaacaagaggaagaaaaagtcgaaaaaagaaa
aaccgaagaagaaaaaaccgccaacaaaaaaggaggaaggtattgagaaaccagaacttg
tcaagaagaagaagaatcggcggaggaagaggaagaaaatgtgccgaaaacttgccaagt
ac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGATTCTGATTCAGCTGCTGCAA 609 437 2719 Antisense
GCTGCTGCAATGGTTCGGGATTTTA 292 297 2734 Antisense
GAAGCGGAATTAGTTCGTCGACAGG 406 341 2809 Antisense
GAAATTCCAGATATTCTGAGCCCTG 644 363 2851 Antisense
CTGAGCCCTGGAGAAATCGACGATC 170 239 2866 Antisense
GACGATCTGGAACCGCCAGTTGTGC 49 379 2884 Antisense
GACTCAGGCCATTCGTCGAACTTTA 210 371 2927 Antisense
TATCCCATCATGCTCAACTGGTCGT 556 657 2987 Antisense
CTGAAGACGAAGCCCCTTCGACTTC 535 237 3031 Antisense
AATCCAATTCCATACCACATCAATA 428 167 3069 Antisense
AATGTGCCGAAAACTTGCCAAGTAC 502 161 3236 Antisense
Sequence Source Affymetrix Proprietary Database