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[186852_at]

Description Y39F10A.3 /REP_DB=WormBase Gene ID /WP=CE21727 /TR=Q9TYN8 /GB=AAD12817.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 28      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 29.7
(-0.6)
A 		59.6
(2.5)
A 		6.9
(-3)
A 		64.6
(3)
A 		58
B 57.4
(3)
A 		29.9
(-0.6)
A 		11
(-3)
A 		50.8
(2.1)
A 		46
C 48.5
(-1.5)
A 		69.2
(0.7)
A 		35
(-3)
A 		90.7
(3)
M 		56
avr 45.2
(0.2) 		52.9
(1.1) 		17.6
(-3) 		68.7
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 11.2
(1.3)
A 		9.3
(-0.5)
A 		6.6
(-3)
A 		7.7
(-2)
A 		8.9
(-0.8)
A 		13
(3)
A 		6
B 43.1
(3)
A 		20.1
(-0.4)
A 		26.7
(0.6)
A 		2.8
(-3)
A 		23.8
(0.1)
A 		7.3
(-2.3)
A 		40
C 6
(-2.3)
A 		19.5
(2)
A 		22.8
(3)
A 		9
(-1.4)
A 		22.8
(3)
A 		3.8
(-3)
A 		19
avr 20.1
(3) 		16.3
(1.3) 		18.7
(2.4) 		6.5
(-3) 		18.5
(2.3) 		8
(-2.3) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.8
(1.9)
A 		12.9
(3)
A 		1.8
(-3)
A 		9.5
(1.2)
A 		11
B 18.3
(3)
A 		7.4
(-1.1)
A 		2.5
(-3)
A 		10.8
(0.2)
A 		16
C 16.1
(0)
A 		19.9
(3)
A 		12.2
(-3)
A 		15.3
(-0.6)
M 		8
avr 15.1
(3) 		13.4
(1.9) 		5.5
(-3) 		11.9
(1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2.1
(-0.8)
A 		3.3
(3)
A 		1.4
(-3)
A 		1.9
(-1.4)
A 		2.7
(1.1)
A 		3.2
(2.7)
A 		2
B 15
(3)
A 		6.7
(-0.5)
A 		6.5
(-0.6)
A 		0.8
(-3)
A 		9.7
(0.8)
A 		2.7
(-2.2)
A 		14
C 2.2
(-2.1)
A 		6
(1.6)
A 		5.8
(1.4)
A 		1.8
(-2.5)
A 		7.4
(3)
A 		1.3
(-3)
A 		6
avr 6.4
(2.8) 		5.3
(1.5) 		4.6
(0.6) 		1.5
(-3) 		6.6
(3) 		2.4
(-1.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186852_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4333
Sequence Type Exemplar sequence
Representative Public ID Y39F10A.3 NCBI
Target Description Y39F10A.3 /REP_DB=WormBase Gene ID /WP=CE21727 /TR=Q9TYN8 /GB=AAD12817.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061406(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061406 NCBI Caenorhabditis elegans Y39F10A.3 (Y39F10A.3) mRNA, complete cds. 11/11 None
SNAP00000004791 ENSEMBL cdna:SNAP chromosome:CEL140:II:781890:783004:-1 11/11 None
GENEFINDER00000004794 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:779386:783007:-1 11/11 None
Y39F10A.3 ENSEMBL cdna:known chromosome:CEL140:II:781890:783007:-1 gene:Y39F10A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:781889-783007(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39F10A.3
Entrez Gene 189759 Entrez gene
SwissProt Q9TYN8 EMBL-EBI
WormBase CE21727 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12817 Hypothetical protein Y39F10A.3 [Caenorhabditis elegans] ref|NP_493807.1| Y39F10A.3 [Caenorhabditis elegans] 1.0E-179
blast AAD12817 Hypothetical protein Y39F10A.3 [Caenorhabditis elegans] ref|NP_493807.1| Y39F10A.3 [Caenorhabditis elegans] 1.0E-175
blast AAD12817 Hypothetical protein Y39F10A.3 [Caenorhabditis elegans] ref|NP_493807.1| Y39F10A.3 [Caenorhabditis elegans] 1.0E-167
blast AAF60792 Hypothetical protein Y55F3AM.11 [Caenorhabditis elegans] ref|NP_500028.1| Y55F3AM.11 [Caenorhabditis elegans] 1.0E-105
blast AAF60792 Hypothetical protein Y55F3AM.11 [Caenorhabditis elegans] ref|NP_500028.1| Y55F3AM.11 [Caenorhabditis elegans] 1.0E-104
blast CAE74720 Hypothetical protein CBG22536 [Caenorhabditis briggsae] 3.0E-98
blast AAD12816 Hypothetical protein Y39F10A.2 [Caenorhabditis elegans] ref|NP_493806.1| Y39F10A.2 [Caenorhabditis elegans] 4.0E-98
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Pfam IPR009283 EMBL-EBI Apyrase 7.0E-15
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493807.1 1 7-24
Y39F10A.3 1 7-24
SNAP00000004791 1 7-24
GENEFINDER00000004794 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:186852_AT
tgctccagaggtgttttgtccggaaaaagtacgtgttggaacaattggtgacggaggaaa
atgggtgtgtaatccgtggaatgttcccgaagattcggtattgttttctctcgggctcaa
taattatattaattttgaagaagaatggcagaagctgaataaaaatcgcaacattttgta
tggatttgatgtggacacacaaaaggatgagactctacagtcctactcccaaatccgagg
aaccgcaatgaaagctaaaatttctccggaaactagcattgctctgagtgcttatacaat
ttccgaccttgccaagcacttcaatgtttcaaagattgagattctaaaaatcgatatcga
aggtgcagagctgacttgtttgataccattcctgaagaactacgaagtttgtcaaatcta
cattgaaattcatggaggtgctccggaacatgctcaccttctagcacagattgctcactt
gggatatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCCAGAGGTGTTTTGTCCGGAA 572 581 330 Antisense
GTGTGTAATCCGTGGAATGTTCCCG 77 485 394 Antisense
GATTCGGTATTGTTTTCTCTCGGGC 258 433 421 Antisense
GTTTTCTCTCGGGCTCAATAATTAT 65 449 432 Antisense
GGATGAGACTCTACAGTCCTACTCC 581 513 534 Antisense
CTACTCCCAAATCCGAGGAACCGCA 701 223 552 Antisense
TTCTCCGGAAACTAGCATTGCTCTG 532 693 591 Antisense
GCTGACTTGTTTGATACCATTCCTG 34 297 699 Antisense
CATGGAGGTGCTCCGGAACATGCTC 357 209 760 Antisense
ACATGCTCACCTTCTAGCACAGATT 459 107 777 Antisense
GCACAGATTGCTCACTTGGGATATC 431 317 793 Antisense
Sequence Source Affymetrix Proprietary Database