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[186849_at]

Description C50H11.17 /REP_DB=WormBase Gene ID /WP=CE19766 /TR=O16484 /GB=AAG24005.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 25.9
(-1.3)
A 		22.5
(-2.2)
A 		19.9
(-3)
A 		40.6
(3)
A 		21
B 42.3
(3)
A 		21.2
(-0.6)
A 		7.2
(-3)
A 		22.7
(-0.4)
A 		35
C 5.4
(-3)
A 		11.2
(-2.6)
A 		18
(-2.1)
A 		86.9
(3)
P 		82
avr 24.5
(-1.4) 		18.3
(-2.4) 		15
(-3) 		50.1
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 3.6
(-2.8)
A 		2.5
(-3)
A 		22.9
(0.7)
A 		33.9
(2.7)
A 		35.5
(3)
A 		20.8
(0.3)
A 		33
B 3.9
(-2.8)
A 		5.4
(-2.6)
A 		50.7
(3)
A 		2.5
(-3)
A 		13.3
(-1.7)
A 		2.9
(-3)
A 		48
C 5.6
(-2.8)
A 		4
(-3)
A 		13.6
(-1.7)
A 		47.1
(3)
A 		25.7
(0)
A 		22.5
(-0.4)
A 		43
avr 4.4
(-2.9) 		4
(-3) 		29.1
(3) 		27.8
(2.7) 		24.8
(2) 		15.4
(-0.3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 9.4
(3)
A 		4.9
(-3)
A 		5.2
(-2.6)
A 		5.9
(-1.7)
A 		5
B 13.5
(3)
A 		5.2
(-1.2)
A 		1.7
(-3)
A 		4.8
(-1.4)
A 		12
C 1.8
(-3)
A 		3.2
(-2.3)
A 		6.3
(-0.9)
A 		14.7
(3)
P 		13
avr 8.2
(2.6) 		4.4
(-3) 		4.4
(-3) 		8.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.7
(-3)
A 		0.9
(-2.9)
A 		5
(-0.4)
A 		8.6
(1.7)
A 		10.7
(3)
A 		5.1
(-0.4)
A 		10
B 1.4
(-2.6)
A 		1.8
(-2.4)
A 		12.3
(3)
A 		0.7
(-3)
A 		5.4
(-0.6)
A 		1.1
(-2.8)
A 		12
C 2.1
(-2.3)
A 		1.2
(-3)
A 		3.5
(-1.3)
A 		9.5
(3)
A 		8.3
(2.1)
A 		7.5
(1.6)
A 		8
avr 1.4
(-2.9) 		1.3
(-3) 		6.9
(1.9) 		6.3
(1.4) 		8.1
(3) 		4.6
(-0.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186849_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15371
Sequence Type Exemplar sequence
Representative Public ID C50H11.17 NCBI
Target Description C50H11.17 /REP_DB=WormBase Gene ID /WP=CE19766 /TR=O16484 /GB=AAG24005.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071446(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071446 NCBI Caenorhabditis elegans C50H11.17 (C50H11.17) mRNA, complete cds. 11/11 None
C50H11.17 ENSEMBL cdna:known chromosome:CEL140:V:3096957:3098515:-1 gene:C50H11.17 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003099 5/11 Cross Hyb Matching Probes None
GENEFINDER00000003115 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3096956-3098515(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50H11.17
Entrez Gene 183702 Entrez gene
SwissProt O16484 EMBL-EBI
WormBase CE19766 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503847 C50H11.17 [Caenorhabditis elegans] gb|AAG24005.1| Hypothetical protein C50H11.17 [Caenorhabditis elegans] 0.0
blast AAC69342 Hypothetical protein Y73C8C.4 [Caenorhabditis elegans] ref|NP_503848.2| Y73C8C.4 [Caenorhabditis elegans] 1.0E-149
blast AAA98574 Hypothetical protein C12D5.9 [Caenorhabditis elegans] ref|NP_504991.1| C12D5.9 [Caenorhabditis elegans] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.1E-55
Sequence
Target Sequence 
>C. ELEGANS:186849_AT
gtgttttaccgcagaagcaactactgtatctatcacttggattttttaaggagagatccg
gaagatcgccgtaatgcatacgtccgtggaaaagaatgtgttaaagaaattgctttagga
ataaaatgtgacgaggaagcattggaatatctagattcacaatatgaaagatttgtggat
attatgagcactaaacaccacggccataaaaacgattctttgttccatgaattggtatca
aaacggtgtgatcctacctgcatggagacctcttacttttctgaagaccacaccaacaaa
accgtcgaactttgcaatgtgatgtatgaagacgctttcaatctctgcttaaatgaagta
aaacctcgggaagacgcgaatagttttccgtgtttcattgatggtaggtttcataatcca
cagctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGTTTTACCGCAGAAGCAACTACT 418 485 373 Antisense
GCAACTACTGTATCTATCACTTGGA 332 319 389 Antisense
GGAGAGATCCGGAAGATCGCCGTAA 646 517 422 Antisense
GATCGCCGTAATGCATACGTCCGTG 389 417 436 Antisense
ACACCACGGCCATAAAAACGATTCT 323 107 567 Antisense
GTGTGATCCTACCTGCATGGAGACC 549 487 618 Antisense
GCATGGAGACCTCTTACTTTTCTGA 696 309 632 Antisense
ACTTTTCTGAAGACCACACCAACAA 341 101 647 Antisense
GAAGACCACACCAACAAAACCGTCG 577 337 655 Antisense
ACGCGAATAGTTTTCCGTGTTTCAT 68 91 746 Antisense
GGTAGGTTTCATAATCCACAGCTAA 314 505 775 Antisense
Sequence Source Affymetrix Proprietary Database