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[186848_at]

Description T24E12.10 /REP_DB=WormBase Gene ID /WP=CE17267 /TR=O44881 /GB=AAB95047.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 8.1
(1.5)
A 		7.5
(0.7)
A 		4.8
(-3)
A 		9.2
(3)
A 		4
B 15.1
(-2.2)
A 		57.9
(3)
A 		8.3
(-3)
A 		14.3
(-2.3)
A 		50
C 14
(2.5)
A 		14
(2.5)
A 		4.5
(-3)
A 		14.8
(3)
A 		10
avr 12.4
(-1.1) 		26.5
(3) 		5.9
(-3) 		12.8
(-1) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 6.1
(-2.5)
A 		25.7
(3)
A 		6.8
(-2.3)
A 		13.8
(-0.3)
A 		4.3
(-3)
A 		9.7
(-1.5)
A 		21
B 6.1
(-2.5)
A 		7.1
(-2.3)
A 		17.6
(0.2)
A 		4.1
(-3)
A 		29.2
(3)
A 		7.2
(-2.3)
A 		25
C 9.7
(-1.2)
A 		26.2
(3)
A 		9.1
(-1.4)
A 		5
(-2.5)
A 		13.7
(-0.2)
A 		2.9
(-3)
A 		23
avr 7.3
(-2.7) 		19.7
(3) 		11.2
(-0.9) 		7.6
(-2.5) 		15.7
(1.2) 		6.6
(-3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.9
(3)
A 		1.6
(-1.6)
A 		1.2
(-3)
A 		1.3
(-2.6)
A 		2
B 4.8
(-1.6)
A 		14.3
(3)
A 		1.9
(-3)
A 		3
(-2.5)
A 		12
C 4.6
(3)
A 		4
(1.8)
A 		1.6
(-3)
A 		2.5
(-1.2)
A 		3
avr 4.1
(-0) 		6.6
(3) 		1.6
(-3) 		2.3
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.1
(-3)
A 		9.1
(3)
A 		1.5
(-2.7)
A 		3.5
(-1.2)
A 		1.3
(-2.9)
A 		2.4
(-2)
A 		8
B 2.1
(-2.4)
A 		2.4
(-2.3)
A 		4.3
(-1.2)
A 		1.1
(-3)
A 		11.9
(3)
A 		2.7
(-2.1)
A 		11
C 3.6
(-0.8)
A 		8
(3)
A 		2.3
(-1.9)
A 		1
(-3)
A 		4.4
(-0.1)
A 		1
(-3)
A 		7
avr 2.3
(-2.5) 		6.5
(3) 		2.7
(-2) 		1.9
(-3) 		5.9
(2.2) 		2
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186848_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5373
Sequence Type Exemplar sequence
Representative Public ID T24E12.10 NCBI
Target Description T24E12.10 /REP_DB=WormBase Gene ID /WP=CE17267 /TR=O44881 /GB=AAB95047.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062245(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062245 NCBI Caenorhabditis elegans T24E12.10 (T24E12.10) mRNA, complete cds. 11/11 None
GENEFINDER00000005586 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3765285:3774173:-1 10/11 None
T24E12.10 ENSEMBL cdna:known chromosome:CEL140:II:3768677:3773185:-1 gene:T24E12.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000005572 5/11 Cross Hyb Matching Probes None
SNAP00000005574 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3768675-3773184(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T24E12.10
Entrez Gene 188866 Entrez gene
SwissProt O44881 EMBL-EBI
WormBase CE17267 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB95047 Hypothetical protein T24E12.10 [Caenorhabditis elegans] ref|NP_494646.1| T24E12.10 [Caenorhabditis elegans] 0.0
blast F88109 protein T24E12.9 [imported] - Caenorhabditis elegans 0.0
blast AAB95044 Hypothetical protein T24E12.9 [Caenorhabditis elegans] ref|NP_494645.1| T24E12.9 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005586 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:186848_AT
gctccagatgatcaccaattctccatccactgggtttctaactttggtaagcccaaacaa
ccagctcccaactacggctataattcactcatggatccgctggaaacctctcagtcacca
gaggttcgagattatgtaaatgaagatggtcatgatttctgtgacagcttaattaagcca
aaggaactgtcacagtcgacaaaagttcgagaagctcaagctgaagatgctgcaccatca
gtttctcctaattatgaagcatctcttgcaagtgacgaagcactttgtgagattgttgtg
gaagttcaagaagatcgccaattctcatcttctccagctagccatgatgcgccaatagag
cagcaggaaacctctcagtcaccagaaaatcaatatgatatagatgaagaagctcaccac
ctctcaactcaatcagttgctcccgttaaagcgtttcttgcaaatgacgaaacaccacat
gagatatctgcggaagttcatgacaatcaccaagtggagtcaccggaaccgtcaccttca
ccagacgttcaaaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCAGATGATCACCAATTCTCCA 535 297 1291 Antisense
ATTCTCCATCCACTGGGTTTCTAAC 318 9 1308 Antisense
CTCCCAACTACGGCTATAATTCACT 476 233 1355 Antisense
ATAATTCACTCATGGATCCGCTGGA 6 27 1370 Antisense
GCTGGAAACCTCTCAGTCACCAGAG 126 295 1389 Antisense
TGCACCATCAGTTTCTCCTAATTAT 657 577 1521 Antisense
TCATCTTCTCCAGCTAGCCATGATG 389 621 1615 Antisense
GAGCAGCAGGAAACCTCTCAGTCAC 304 389 1648 Antisense
TGCTCCCGTTAAAGCGTTTCTTGCA 292 581 1728 Antisense
CAAGTGGAGTCACCGGAACCGTCAC 206 183 1801 Antisense
TCACCTTCACCAGACGTTCAAAATG 285 625 1822 Antisense
Sequence Source Affymetrix Proprietary Database