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[186847_s_at]

Description T05G5.8 /REP_DB=WormBase Gene ID /WP=CE21152 /TR=SW:P34561 /GB=CAA81595.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 75      4grp_highest_8_8 > 51      4grp_high_8_8 > 24      6grp_highest_nonorm > 73      6grp_total > 65      4grp_total > 39      6grp_highest_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 518.8
(3)
P 		467.9
(0.6)
P 		393.4
(-3)
P 		458.9
(0.1)
P 		125
B 558.5
(3)
P 		355.9
(-2)
P 		372.9
(-1.6)
P 		315.1
(-3)
P 		243
C 495.5
(3)
P 		285
(-3)
P 		384.1
(-0.2)
P 		439.1
(1.4)
P 		211
avr 524.3
(3) 		369.6
(-3) 		383.5
(-2.5) 		404.4
(-1.7) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 310
1 2 3 4 5 6 range
A 573.4
(1.4)
P 		544.6
(0.2)
P 		492.8
(-2)
P 		557.6
(0.7)
P 		470
(-3)
P 		610.5
(3)
P 		141
B 389.5
(-3)
P 		515.3
(-0.6)
P 		451.6
(-1.8)
P 		601.8
(1.1)
P 		406.3
(-2.7)
P 		699.4
(3)
P 		310
C 468.1
(-1.8)
P 		514.4
(-0.7)
P 		536.4
(-0.1)
P 		663.6
(3)
P 		421.2
(-3)
P 		600
(1.4)
P 		242
avr 477
(-1.7) 		524.8
(-0.3) 		493.6
(-1.2) 		607.7
(2.2) 		432.5
(-3) 		636.6
(3) 		204
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 188.9
(3)
P 		101.6
(-1.3)
P 		102.8
(-1.2)
P 		67.2
(-3)
P 		122
B 178.1
(3)
P 		87.9
(-1.9)
P 		86.4
(-2)
P 		67.2
(-3)
P 		111
C 164
(3)
P 		81.9
(-2.5)
P 		133.9
(1)
P 		74
(-3)
P 		90
avr 177
(3) 		90.5
(-1.8) 		107.7
(-0.9) 		69.5
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 155
1 2 3 4 5 6 range
A 105.7
(-3)
P 		193.7
(3)
P 		107.3
(-2.9)
P 		141.4
(-0.6)
P 		141.8
(-0.5)
P 		148.6
(-0.1)
P 		88
B 135.5
(-2)
P 		171.5
(-0.5)
P 		109.7
(-3)
P 		159.4
(-1)
P 		165.1
(-0.8)
P 		260.8
(3)
P 		151
C 173.5
(0.6)
P 		157
(-0.9)
P 		136.5
(-2.7)
P 		133.4
(-3)
P 		136.3
(-2.7)
P 		200.9
(3)
P 		68
avr 138.2
(-1.6) 		174.1
(0.9) 		117.8
(-3) 		144.7
(-1.1) 		147.7
(-0.9) 		203.4
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186847_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6065
Sequence Type Exemplar sequence
Representative Public ID T05G5.8 NCBI
Target Description T05G5.8 /REP_DB=WormBase Gene ID /WP=CE21152 /TR=SW:P34561 /GB=CAA81595.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066756(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066756 NCBI Caenorhabditis elegans T05G5.8 (T05G5.8) mRNA, complete cds. 11/11 None
GENEFINDER00000019886 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9753603:9757409:-1 11/11 None
SNAP00000019881 ENSEMBL cdna:SNAP chromosome:CEL140:III:9753723:9757409:-1 11/11 None
T05G5.8 ENSEMBL cdna:known chromosome:CEL140:III:9753576:9757409:-1 gene:T05G5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9753718-9757405(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05G5.8
Entrez Gene 176377 Entrez gene
SwissProt P34561 EMBL-EBI
WormBase CE21152 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261880_AT membrane trafficking VPS53 family protein at
CANINE_2:CFAAFFX.29165.1.S1_S_AT similar to CG3338-PA cfa
CANINE_2:CFAAFFX.29175.1.S1_S_AT similar to CG3338-PA cfa
DROSOPHILA_2:1636140_AT dm
DROSGENOME1:154394_AT dm
CHICKEN:GGA.15855.1.S1_AT similar to RIKEN cDNA 3100002B05 gga
CHICKEN:GGA.18579.1.S1_AT similar to RIKEN cDNA 3100002B05 gga
CHICKEN:GGA.18876.1.S1_AT similar to RIKEN cDNA 3100002B05 gga
CHICKEN:GGAAFFX.11900.1.S1_S_AT similar to RIKEN cDNA 3100002B05 gga
CHICKEN:GGAAFFX.3030.1.S1_AT similar to RIKEN cDNA 3100002B05 gga
HG-U133_PLUS_2:221707_S_AT hypothetical protein FLJ10979 hs
HG-U133A:221707_S_AT hypothetical protein FLJ10979 hs
HG-U133A_2:221707_S_AT hypothetical protein FLJ10979 hs
HG-U133_PLUS_2:219794_AT hypothetical protein FLJ10979 hs
HG-U133A:219794_AT hypothetical protein FLJ10979 hs
HG-U133A_2:219794_AT hypothetical protein FLJ10979 hs
HU35KSUBC:RC_AA281793_AT hypothetical protein FLJ10979 hs
U133_X3P:G8922801_3P_AT hypothetical protein FLJ10979 hs
U133_X3P:G13543951_3P_S_AT hypothetical protein FLJ10979 hs
U133_X3P:HS.258401.0.A1_3P_AT hypothetical protein FLJ10979 hs
HG-U133_PLUS_2:235710_AT hypothetical protein FLJ10979 hs
HG-U133B:235710_AT hypothetical protein FLJ10979 hs
HG-U95B:42054_AT hypothetical protein FLJ10979 hs
HG-U95C:53893_AT hypothetical protein FLJ10979 hs
HG-U95B:42615_AT Hypothetical protein FLJ10979 hs
HU35KSUBB:RC_T79923_AT Hypothetical protein FLJ10979 hs
HU35KSUBB:RC_N49378_AT Hypothetical protein FLJ10979 hs
U133_X3P:HS2.14662.1.S1_3P_AT Hypothetical protein FLJ10979 hs
U133_X3P:HS.21475.0.A1_3P_AT Hypothetical protein FLJ10979 hs
U133_X3P:HS.148185.0.S1_3P_AT Hypothetical protein FLJ10979 hs
HG-U133_PLUS_2:1559108_AT Hypothetical protein FLJ10979 hs
HG-U133_PLUS_2:1559109_A_AT Hypothetical protein FLJ10979 hs
HG-U133_PLUS_2:229653_AT Hypothetical protein FLJ10979 hs
HG-U133B:229653_AT Hypothetical protein FLJ10979 hs
HG-U133_PLUS_2:235882_AT Hypothetical protein FLJ10979 hs
HG-U133B:235882_AT Hypothetical protein FLJ10979 hs
HG-U95B:48464_AT Hypothetical protein FLJ10979 hs
HG-U95D:91272_AT Hypothetical protein FLJ10979 hs
HG-U95D:83464_R_AT Hypothetical protein FLJ10979 hs
MG-U74AV2:103650_AT RIKEN cDNA 3100002B05 gene mm
MG-U74BV2:108440_AT RIKEN cDNA 3100002B05 gene mm
MOE430A:1455644_AT RIKEN cDNA 3100002B05 gene mm
MOUSE430A_2:1455644_AT RIKEN cDNA 3100002B05 gene mm
MOUSE430_2:1455644_AT RIKEN cDNA 3100002B05 gene mm
MOE430A:1436327_A_AT RIKEN cDNA 3100002B05 gene mm
MOUSE430A_2:1436327_A_AT RIKEN cDNA 3100002B05 gene mm
MOUSE430_2:1436327_A_AT RIKEN cDNA 3100002B05 gene mm
MOE430A:1416989_AT RIKEN cDNA 3100002B05 gene mm
MOUSE430A_2:1416989_AT RIKEN cDNA 3100002B05 gene mm
MOUSE430_2:1416989_AT RIKEN cDNA 3100002B05 gene mm
MG-U74CV2:165938_R_AT RIKEN cDNA 3100002B05 gene, mRNA (cDNA clone MGC:19253 IMAGE:3964008) mm
MU19KSUBA:TC16658_AT RIKEN cDNA 3100002B05 gene, mRNA (cDNA clone MGC:19253 IMAGE:3964008) mm
MU19KSUBA:TC16658_G_AT RIKEN cDNA 3100002B05 gene, mRNA (cDNA clone MGC:19253 IMAGE:3964008) mm
MU19KSUBA:TC20666_AT RIKEN cDNA 3100002B05 gene, mRNA (cDNA clone MGC:19253 IMAGE:3964008) mm
MU19KSUBB:TC32870_AT RIKEN cDNA 3100002B05 gene, mRNA (cDNA clone MGC:19253 IMAGE:3964008) mm
RG-U34B:RC_AA996464_AT similar to hypothetical protein FLJ10979 (predicted) rn
RAE230A:1374824_AT similar to hypothetical protein FLJ10979 (predicted) rn
RAT230_2:1374824_AT similar to hypothetical protein FLJ10979 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA81595 Hypothetical protein T05G5.8 [Caenorhabditis elegans] ref|NP_499157.1| T05G5.8 [Caenorhabditis elegans] sp|P34561|YNP8_CAEEL Hypothetical protein T05G5.8 in chromosome III 0.0
blast CAE65113 Hypothetical protein CBG09978 [Caenorhabditis briggsae] 0.0
blast S41008 hypothetical protein T05G5.8 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007234 EMBL-EBI Vps53-like, N-terminal 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:186847_S_AT
tgctcatttttgcctaaaactcgcaactcaacttgctcacaaatttgttggatcattatt
ccgttgccgaacaattagtactcatggagctgagcaactgttacttgagactcattcgct
aaaaacatttttgctcagtgtaccatcaattgatagtattatcaactcaaaaccaccaac
ggcatacgttaccagtgtgaatgcagctctgacaaaagctgaaatgattttgaaagtagt
aatgtgcagtttggagactgtcgatgaatttgttgaacaatatattaaacttctaccagc
gtcggatgcagcagaaatgcaaaaagttcttgaaatgaaaggagttaaacgacaagagca
ttcggcagttctcaacgcttatcgattgaaaatcggtgcatctggctcggatccaattca
acaatcgaatagtctaacttctcggattggtggagcactaccaactgttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTCATTTTTGCCTAAAACTCGCA 383 579 1836 Antisense
AAACTCGCAACTCAACTTGCTCACA 4 129 1852 Antisense
GTTGGATCATTATTCCGTTGCCGAA 107 437 1882 Antisense
ACATTTTTGCTCAGTGTACCATCAA 23 105 1960 Antisense
ACTCAAAACCACCAACGGCATACGT 680 99 2000 Antisense
ACGTTACCAGTGTGAATGCAGCTCT 137 93 2021 Antisense
TAAACTTCTACCAGCGTCGGATGCA 543 639 2121 Antisense
TTCGGCAGTTCTCAACGCTTATCGA 180 695 2196 Antisense
GCATCTGGCTCGGATCCAATTCAAC 563 309 2233 Antisense
TAGTCTAACTTCTCGGATTGGTGGA 170 603 2265 Antisense
GGTGGAGCACTACCAACTGTTGGAA 269 499 2284 Antisense
Sequence Source Affymetrix Proprietary Database