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[186846_s_at]

Description F36G3.1 /REP_DB=WormBase Gene ID /WP=CE15979 /TR=SW:Q09560 /GB=CAA87338.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 10      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 31      6grp_total > 41      4grp_total > 62      6grp_highest_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 803
1 2 3 4 range
A 1006.2
(3)
P 		600.5
(-0)
P 		698.7
(0.7)
P 		205.8
(-3)
P 		800
B 926.4
(3)
P 		577.5
(0.1)
P 		564
(-0)
P 		212.2
(-3)
P 		714
C 938.2
(3)
P 		603.4
(0.3)
P 		641.4
(0.6)
P 		202.9
(-3)
P 		735
avr 956.9
(3) 		593.8
(0.1) 		634.7
(0.4) 		207
(-3) 		750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 991
1 2 3 4 5 6 range
A 977.1
(1.3)
P 		919.6
(0.9)
P 		1221.8
(3)
P 		1191.5
(2.8)
P 		872
(0.6)
P 		353.2
(-3)
P 		869
B 1245.2
(3)
P 		1091.7
(1.8)
P 		1030
(1.3)
P 		1076
(1.7)
P 		972.4
(0.8)
P 		483.9
(-3)
P 		761
C 1120.3
(1.5)
P 		1119.1
(1.5)
P 		977.2
(0.6)
P 		1344.5
(3)
P 		627.4
(-1.7)
P 		430.9
(-3)
P 		914
avr 1114.2
(2.3) 		1043.5
(1.8) 		1076.3
(2) 		1204
(3) 		823.9
(0.1) 		422.7
(-3) 		781
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 336
1 2 3 4 range
A 366.3
(3)
P 		130.3
(-1.2)
P 		182.7
(-0.3)
P 		30.1
(-3)
P 		336
B 295.4
(3)
P 		142.6
(-0.7)
P 		130.7
(-0.9)
P 		45.2
(-3)
P 		250
C 310.6
(3)
P 		173.5
(0)
P 		223.6
(1.1)
P 		34.2
(-3)
P 		276
avr 324.1
(3) 		148.8
(-0.7) 		179
(-0) 		36.5
(-3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 347
1 2 3 4 5 6 range
A 180.1
(-0.7)
P 		327
(3)
P 		266.1
(1.5)
P 		302.2
(2.4)
P 		263.1
(1.4)
P 		86
(-3)
P 		241
B 433.3
(3)
P 		363.4
(1.3)
P 		250.1
(-1.3)
P 		285
(-0.5)
P 		395.1
(2.1)
P 		180.4
(-3)
P 		253
C 415.2
(3)
P 		341.5
(1.4)
P 		248.7
(-0.7)
P 		270.4
(-0.2)
P 		203
(-1.7)
P 		144.2
(-3)
P 		271
avr 342.9
(3) 		344
(3) 		255
(0.4) 		285.9
(1.3) 		287.1
(1.4) 		136.9
(-3) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186846_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16839
Sequence Type Exemplar sequence
Representative Public ID F36G3.1 NCBI
Target Description F36G3.1 /REP_DB=WormBase Gene ID /WP=CE15979 /TR=SW:Q09560 /GB=CAA87338.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077241(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077241 NCBI Caenorhabditis elegans F36G3.1 (F36G3.1) mRNA, complete cds. 11/11 None
SNAP00000015720 ENSEMBL cdna:SNAP chromosome:CEL140:X:9780657:9782390:-1 11/11 None
GENEFINDER00000015726 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9780867:9789123:-1 9/11 None
F36G3.1 ENSEMBL cdna:known chromosome:CEL140:X:9780317:9789142:-1 gene:F36G3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9780656-9789123(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F36G3.1
Entrez Gene 181191 Entrez gene
SwissProt Q09560 EMBL-EBI
WormBase CE15979 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87338 Hypothetical protein F36G3.1 [Caenorhabditis elegans] ref|NP_509642.1| F36G3.1 [Caenorhabditis elegans] sp|Q09560|YQY1_CAEEL Hypothetical protein F36G3.1 in chromosome X 0.0
blast CAE58711 Hypothetical protein CBG01895 [Caenorhabditis briggsae] 0.0
blast CAA87338 Hypothetical protein F36G3.1 [Caenorhabditis elegans] ref|NP_509642.1| F36G3.1 [Caenorhabditis elegans] sp|Q09560|YQY1_CAEEL Hypothetical protein F36G3.1 in chromosome X 1.0E-166
blast CAE58711 Hypothetical protein CBG01895 [Caenorhabditis briggsae] 1.0E-142
blast CAH03621 Guanylate nucleotide binding protein, putative [Paramecium tetraurelia] ref|YP_054351.1| Guanylate nucleotide binding protein, putative [Paramecium tetraurelia] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:186846_S_AT
gttatcgttcagcgccaaaaggagattattgaaaatcttagagaagaactggatgcaatt
actaagaagctcggggaggtcacaaaactgagagataaagctgttgaggaggccacacta
tacaaaatgaaaaacatggagcgggatcgtttcttatctagagaagcacaaatgtccatg
gaaattgaggatttgcagcgagaacttaacaagcagaaacttattcttaatcaaacaagt
atggctaaactagccgataccttcgatagaaaagttctccaccttgagaacgaactgcgg
gagagagatatgcttatttgtaagcaaaatcaaatcatcaacagtcatcggaagtcgccg
accggatcagttatcactcatcgcaaaatgcaacctcgtgcgtcagttcttgctgctgca
ggaaatttgccaagtgccggtagtagctcagaatcgttccaaaatgggttagatgttgaa
gcaagagaggccttgttaagctttattttgagcgatcggcataaccaacttgcgaatatc
tacaacattggacgcattttggatttgacaccacaagaggagcgttctgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATCGTTCAGCGCCAAAAGGAGA 66 447 2284 Antisense
GCTGTTGAGGAGGCCACACTATACA 647 295 2383 Antisense
TGGAGCGGGATCGTTTCTTATCTAG 269 549 2420 Antisense
CTCCACCTTGAGAACGAACTGCGGG 250 235 2560 Antisense
TCATCAACAGTCATCGGAAGTCGCC 207 619 2618 Antisense
GAAGTCGCCGACCGGATCAGTTATC 305 335 2634 Antisense
GATCAGTTATCACTCATCGCAAAAT 288 421 2648 Antisense
CGTCAGTTCTTGCTGCTGCAGGAAA 356 245 2684 Antisense
TGCCAAGTGCCGGTAGTAGCTCAGA 326 585 2711 Antisense
CGATCGGCATAACCAACTTGCGAAT 528 249 2796 Antisense
GACACCACAAGAGGAGCGTTCTGTA 519 367 2850 Antisense
Sequence Source Affymetrix Proprietary Database