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[186845_at]

Description E02C12.10 /REP_DB=WormBase Gene ID /WP=CE04319 /TR=Q19034 /GB=AAA83467.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 92
1 2 3 4 range
A 4.8
(-2.9)
A 		6.2
(-2.6)
A 		4.2
(-3)
A 		33.6
(3)
A 		29
B 3.1
(-3)
A 		4
(-2)
A 		3.7
(-2.3)
A 		8.3
(3)
A 		5
C 1.3
(-3)
A 		1.8
(-3)
A 		4.7
(-2.8)
A 		92.9
(3)
P 		92
avr 3.1
(-3) 		4
(-2.9) 		4.2
(-2.8) 		44.9
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 23.6
(3)
A 		4.8
(-2)
A 		17
(1.2)
A 		3.7
(-2.3)
A 		1.1
(-3)
A 		4.2
(-2.2)
A 		23
B 10.1
(0.7)
A 		15.7
(3)
A 		1
(-3)
A 		5.1
(-1.3)
A 		7.8
(-0.2)
A 		1.1
(-3)
A 		15
C 4.7
(-2)
A 		17.1
(0.9)
A 		2.6
(-2.5)
A 		3.6
(-2.3)
A 		26.2
(3)
A 		0.4
(-3)
A 		26
avr 12.8
(3) 		12.5
(2.8) 		6.9
(-0.2) 		4.1
(-1.8) 		11.7
(2.4) 		1.9
(-3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1.8
(-1.9)
A 		1.3
(-2.7)
A 		1.1
(-3)
A 		4.9
(3)
A 		4
B 1
(-2.3)
A 		1
(-2.3)
A 		0.9
(-3)
A 		1.8
(3)
A 		1
C 0.4
(-3)
A 		0.5
(-3)
A 		1.6
(-2.5)
A 		15.7
(3)
P 		15
avr 1.1
(-2.8) 		0.9
(-3) 		1.2
(-2.7) 		7.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 4.4
(3)
A 		1.7
(-1)
A 		3.7
(2)
A 		1
(-2)
A 		0.3
(-3)
A 		1
(-2)
A 		4
B 3.5
(1)
A 		5.2
(3)
A 		0.2
(-3)
A 		1.3
(-1.7)
A 		3.2
(0.6)
A 		0.4
(-2.8)
A 		5
C 1.7
(-1.9)
A 		5.2
(0.6)
A 		0.7
(-2.6)
A 		0.7
(-2.6)
A 		8.5
(3)
A 		0.1
(-3)
A 		8
avr 3.2
(1.6) 		4
(3) 		1.5
(-1.3) 		1
(-2.1) 		4
(3) 		0.5
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186845_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11777
Sequence Type Exemplar sequence
Representative Public ID E02C12.10 NCBI
Target Description E02C12.10 /REP_DB=WormBase Gene ID /WP=CE04319 /TR=Q19034 /GB=AAA83467.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073029(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073029 NCBI Caenorhabditis elegans E02C12.10 (E02C12.10) mRNA, complete cds. 11/11 A 
E02C12.10 ENSEMBL cdna:known chromosome:CEL140:V:9377683:9380988:-1 gene:E02C12.10 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030824 1/11 Cross Hyb Matching Probes None
SNAP00000032009 7/11 Cross Hyb Matching Probes None
GENEFINDER00000032014 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9377682-9380988(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02C12.10
Entrez Gene 183989 Entrez gene
SwissProt Q19034 EMBL-EBI
WormBase CE04319 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83467 Hypothetical protein E02C12.10 [Caenorhabditis elegans] ref|NP_505430.1| E02C12.10 [Caenorhabditis elegans] 0.0
blast AAF39843 Hypothetical protein F56A4.5 [Caenorhabditis elegans] ref|NP_503669.1| F56A4.5 [Caenorhabditis elegans] 1.0E-146
blast NP_503696 Y45G12C.4 [Caenorhabditis elegans] gb|AAF60581.1| Hypothetical protein Y45G12C.4 [Caenorhabditis elegans] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.8E-7
Sequence
Target Sequence 
>C. ELEGANS:186845_AT
cagacagcttccaagcagatttgctgtaaaaatttcaactcaagtacctcttttggaact
gtcaaaaattatcaagttttctggtgaaaatggatttggagaggataaactgaagagact
tgggaagacaacaagggagttccataatcgagaagttgactcttataaacttctgatgag
atataatcatccgaatattccatacacaaaagtatacggttttaaaaagtttgatgacga
taacgacttgaaaggatttttgattgtcgattatgtggaaaatggacatgtgatttgtac
tagtgcagccgaggagaaactacacttcaagggagaaactacacttcgatggcaagggta
catgtcaattattgcattgatcaatgcagattgggtagatgttgagaaaggaaaaaatgt
gccatcaaaatttgctgttaaaatttcaactttattgcctctcgttgctctttccaaatt
tatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGACAGCTTCCAAGCAGATTTGCT 144 205 1461 Antisense
ATTTCAACTCAAGTACCTCTTTTGG 410 11 1492 Antisense
CAAGTACCTCTTTTGGAACTGTCAA 315 185 1501 Antisense
AAGGGAGTTCCATAATCGAGAAGTT 593 71 1593 Antisense
GTTGACTCTTATAAACTTCTGATGA 210 439 1615 Antisense
ATCATCCGAATATTCCATACACAAA 90 31 1646 Antisense
GTGATTTGTACTAGTGCAGCCGAGG 388 485 1750 Antisense
GAAACTACACTTCGATGGCAAGGGT 459 357 1795 Antisense
AATGTGCCATCAAAATTTGCTGTTA 278 163 1876 Antisense
AATTTCAACTTTATTGCCTCTCGTT 476 175 1902 Antisense
TCTCGTTGCTCTTTCCAAATTTATG 520 611 1920 Antisense
Sequence Source Affymetrix Proprietary Database