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[186844_at]

Description F16G10.10 /REP_DB=WormBase Gene ID /WP=CE19399 /TR=O76595 /GB=AAC26278.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 30
(-3)
A 		70.2
(1)
A 		44.9
(-1.5)
P 		90.2
(3)
P 		60
B 60.9
(-1.5)
A 		97.9
(3)
M 		48.8
(-3)
A 		55.8
(-2.1)
A 		49
C 56.4
(-2.3)
A 		99.3
(0.6)
A 		46
(-3)
A 		135.4
(3)
P 		89
avr 49.1
(-2.7) 		89.1
(2.4) 		46.6
(-3) 		93.8
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 37.8
(-1.8)
A 		42.4
(-0.6)
A 		53.8
(2.3)
A 		33
(-3)
A 		42.3
(-0.6)
P 		56.7
(3)
A 		24
B 48.8
(1.5)
P 		57.9
(3)
A 		51.7
(2)
P 		28.7
(-1.9)
A 		43.4
(0.6)
A 		22.1
(-3)
A 		36
C 26.7
(-0.1)
A 		46.8
(3)
A 		7.5
(-3)
A 		44.7
(2.7)
A 		24.7
(-0.4)
A 		44.7
(2.7)
P 		39
avr 37.8
(-2) 		49
(3) 		37.7
(-2) 		35.5
(-3) 		36.8
(-2.4) 		41.2
(-0.5) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.9
(-3)
A 		15.2
(3)
A 		11.7
(-1.9)
P 		13.2
(0.2)
P 		4
B 19.4
(0.8)
A 		24.2
(3)
M 		11.3
(-3)
A 		11.9
(-2.7)
A 		13
C 18.7
(-1.7)
A 		28.5
(3)
A 		16
(-3)
A 		22.8
(0.3)
P 		13
avr 16.3
(-0.9) 		22.6
(3) 		13
(-3) 		16
(-1.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7
(-3)
A 		15.1
(3)
A 		11.7
(0.5)
A 		8.4
(-2)
A 		12.8
(1.3)
P 		13.8
(2)
A 		8
B 17
(1.8)
P 		19.3
(3)
A 		12.6
(-0.4)
P 		7.6
(-3)
A 		17.6
(2.1)
A 		8.2
(-2.7)
A 		12
C 9.9
(0.7)
A 		14.3
(2.7)
A 		1.9
(-3)
A 		9
(0.3)
A 		8
(-0.2)
A 		14.9
(3)
P 		13
avr 11.3
(-0.7) 		16.2
(3) 		8.7
(-2.7) 		8.3
(-3) 		12.8
(0.4) 		12.3
(0) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4146
Sequence Type Exemplar sequence
Representative Public ID F16G10.10 NCBI
Target Description F16G10.10 /REP_DB=WormBase Gene ID /WP=CE19399 /TR=O76595 /GB=AAC26278.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061863 NCBI Caenorhabditis elegans F16G10.10 (F16G10.10) mRNA, complete cds. 11/11 None
F16G10.10 ENSEMBL cdna:known chromosome:CEL140:II:2389583:2391064:-1 gene:F16G10.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023121 6/11 Cross Hyb Matching Probes None
GENEFINDER00000023136 8/11 Cross Hyb Matching Probes None
SNAP00000013400 1/11 Cross Hyb Matching Probes None
GENEFINDER00000013406 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2389581-2391063(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F16G10.10
Entrez Gene 184584 Entrez gene
SwissProt O76595 EMBL-EBI
WormBase CE19399 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26278 Hypothetical protein F16G10.10 [Caenorhabditis elegans] ref|NP_494264.1| F16G10.10 [Caenorhabditis elegans] 1.0E-120
blast AAA80369 Hypothetical protein F47B7.5 [Caenorhabditis elegans] ref|NP_508650.1| F47B7.5 [Caenorhabditis elegans] 2.0E-23
blast AAC26281 Hypothetical protein F16G10.14 [Caenorhabditis elegans] ref|NP_494267.1| F16G10.14 [Caenorhabditis elegans] 4.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 3.6E-77
Sequence
Target Sequence 
>C. ELEGANS:186844_AT
gcaaattttctgcctgtgtggattgataatttcttgctttaaaagctctggtagcatccc
aaaaaacaagaacaacgatgtcgaaaatttcttattttgtatttctaactttgtgtttga
ttggccacatggaagccaaatgtattgccaatttgccatcaactttagtcaggcgaagtg
cccagacctattgaaagaagaagtggttcagcgtaagccggaaaatcaccccagaatcat
attaggccagcagagatcttttgaaatttcagttccaatgacgatcgaaaaggttgatgg
ctgcgatgtgttcgtctgtcccgagaacacattgccatatgttcttggatcatatgaagg
aagcgaactgccaaaagctgataatggtgaaaaagattttctaatcccacctccattgtc
tatggcagatttgggtggcggcaccataaatgattactatggactcacatgtgaaaacaa
tttgctgacggcctcgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAATTTTCTGCCTGTGTGGATTG 18 319 15 Antisense
TAAAAGCTCTGGTAGCATCCCAAAA 12 641 54 Antisense
GCCAATTTGCCATCAACTTTAGTCA 449 277 161 Antisense
AGTCAGGCGAAGTGCCCAGACCTAT 274 61 181 Antisense
AGCGTAAGCCGGAAAATCACCCCAG 360 65 224 Antisense
ATCACCCCAGAATCATATTAGGCCA 695 27 239 Antisense
TGATGGCTGCGATGTGTTCGTCTGT 470 567 309 Antisense
CTGTCCCGAGAACACATTGCCATAT 48 241 330 Antisense
TCCCACCTCCATTGTCTATGGCAGA 477 597 419 Antisense
TATGGCAGATTTGGGTGGCGGCACC 10 655 435 Antisense
AACAATTTGCTGACGGCCTCGAAAT 234 135 490 Antisense
Sequence Source Affymetrix Proprietary Database