[Home] | [Total List]

[186843_at]

Description Y65B4BL.6 /REP_DB=WormBase Gene ID /WP=CE22747 /TR=Q9N301 /GB=AAF60847.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 3.5
(-3)
A 		85.9
(3)
A 		34.8
(-0.7)
A 		3.8
(-3)
A 		82
B 9.1
(-2.7)
A 		68.2
(3)
A 		13.4
(-2.3)
A 		6
(-3)
A 		62
C 8
(-3)
A 		62.8
(3)
A 		18.2
(-1.9)
A 		15.9
(-2.1)
A 		55
avr 6.9
(-3) 		72.3
(3) 		22.1
(-1.6) 		8.6
(-2.8) 		65

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 11.2
(-3)
A 		89.7
(3)
A 		16.1
(-2.6)
A 		54.6
(0.3)
A 		86.7
(2.8)
A 		16.6
(-2.6)
A 		79
B 8.6
(-3)
A 		50.1
(1.7)
A 		41.7
(0.8)
A 		39
(0.5)
A 		61.1
(3)
A 		48.5
(1.6)
A 		53
C 4.3
(-3)
A 		45.1
(-0.7)
A 		7.3
(-2.8)
A 		20.4
(-2.1)
A 		110.6
(3)
A 		37.9
(-1.1)
A 		106
avr 8
(-3) 		61.6
(1.1) 		21.7
(-1.9) 		38
(-0.7) 		86.1
(3) 		34.3
(-1) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 1.3
(-2.8)
A 		18.6
(3)
A 		9.1
(-0.2)
A 		0.6
(-3)
A 		18
B 2.9
(-2.4)
A 		16.8
(3)
A 		3.1
(-2.3)
A 		1.3
(-3)
A 		16
C 2.6
(-3)
A 		18.1
(3)
A 		6.4
(-1.5)
A 		2.7
(-3)
A 		16
avr 2.3
(-2.7) 		17.8
(3) 		6.2
(-1.3) 		1.5
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 2.1
(-3)
A 		31.9
(3)
A 		3.5
(-2.7)
A 		13.8
(-0.6)
A 		26.2
(1.9)
A 		4
(-2.6)
A 		30
B 3
(-3)
A 		16.7
(0.8)
A 		10.1
(-1)
A 		10.3
(-1)
A 		24.8
(3)
A 		18.1
(1.2)
A 		22
C 1.6
(-3)
A 		13.8
(-0.9)
A 		1.9
(-2.9)
A 		4.1
(-2.6)
A 		35.8
(3)
A 		12.7
(-1.1)
A 		34
avr 2.2
(-3) 		20.8
(1.2) 		5.2
(-2.3) 		9.4
(-1.4) 		28.9
(3) 		11.6
(-0.9) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186843_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2578
Sequence Type Exemplar sequence
Representative Public ID Y65B4BL.6 NCBI
Target Description Y65B4BL.6 /REP_DB=WormBase Gene ID /WP=CE22747 /TR=Q9N301 /GB=AAF60847.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058344(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058344 NCBI Caenorhabditis elegans Y65B4BL.6 (Y65B4BL.6) mRNA, complete cds. 11/11 None
Y65B4BL.6 ENSEMBL cdna:known chromosome:CEL140:I:520280:520538:-1 gene:Y65B4BL.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000040887 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:520279-520538(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y65B4BL.6
Entrez Gene 190487 Entrez gene
SwissProt Q9N301 EMBL-EBI
WormBase CE22747 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60847 Hypothetical protein Y65B4BL.6 [Caenorhabditis elegans] ref|NP_490745.1| Y65B4BL.6 [Caenorhabditis elegans] 1.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_490745.1 1 9-31
Y65B4BL.6 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:186843_AT
tgcacttttctggcaagaacaccggtcatggtcgtttgcttcgtgcttctcgccatctca
accggcgagtcgttggcgtgtctcggagggagtggaggtggctgctgcatgaccagcgga
tgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACTTTTCTGGCAAGAACACCGG 382 577 49 Antisense
TTCTGGCAAGAACACCGGTCATGGT 552 691 56 Antisense
GGCAAGAACACCGGTCATGGTCGTT 194 533 60 Antisense
AAGAACACCGGTCATGGTCGTTTGC 186 149 63 Antisense
GAACACCGGTCATGGTCGTTTGCTT 234 351 65 Antisense
CTTCTCGCCATCTCAACCGGCGAGT 21 221 94 Antisense
CTCGCCATCTCAACCGGCGAGTCGT 276 233 97 Antisense
GTTGGCGTGTCTCGGAGGGAGTGGA 630 435 120 Antisense
GGCGTGTCTCGGAGGGAGTGGAGGT 80 541 123 Antisense
TCGGAGGGAGTGGAGGTGGCTGCTG 288 603 131 Antisense
TGGCTGCTGCATGACCAGCGGATGC 78 545 147 Antisense
Sequence Source Affymetrix Proprietary Database