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[186841_at]

Description Y57G11C.9B /REP_DB=WormBase Gene ID /WP=CE24477 /TR=Q9U202 /GB=CAB54458.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 60      4grp_high_8_8 > 17      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 30      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 591
1 2 3 4 range
A 1138.5
(3)
P 		620.8
(-2.3)
P 		547.6
(-3)
P 		977.8
(1.4)
P 		591
B 1109.6
(3)
P 		729.3
(-1.4)
P 		591
(-3)
P 		699.3
(-1.7)
P 		519
C 928.9
(3)
P 		655.2
(-1.4)
P 		552.4
(-3)
P 		702.3
(-0.6)
P 		377
avr 1059
(3) 		668.4
(-1.7) 		563.7
(-3) 		793.1
(-0.2) 		495

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 465
1 2 3 4 5 6 range
A 611.1
(-1.7)
P 		948.2
(3)
P 		521.2
(-3)
P 		571.6
(-2.3)
P 		614.9
(-1.7)
P 		629.4
(-1.5)
P 		427
B 770
(3)
P 		629.1
(0)
P 		486.3
(-2.9)
P 		605.9
(-0.4)
P 		496.6
(-2.7)
P 		483.6
(-3)
P 		286
C 836.5
(3)
P 		578.3
(-3)
P 		612.7
(-2.2)
P 		608.2
(-2.3)
P 		616.9
(-2.1)
P 		614.5
(-2.2)
P 		258
avr 739.2
(3) 		718.5
(2.4) 		540.1
(-3) 		595.2
(-1.3) 		576.1
(-1.9) 		575.8
(-1.9) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 296
1 2 3 4 range
A 414.5
(3)
P 		134.8
(-3)
P 		143.1
(-2.8)
P 		143.1
(-2.8)
P 		280
B 353.8
(3)
P 		180.1
(-1.8)
P 		136.9
(-3)
P 		149
(-2.7)
P 		217
C 307.5
(3)
P 		188.4
(-0.8)
P 		192.5
(-0.6)
P 		118.4
(-3)
P 		189
avr 358.6
(3) 		167.8
(-2.2) 		157.5
(-2.4) 		136.8
(-3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 225
1 2 3 4 5 6 range
A 112.7
(-3)
P 		337.2
(3)
P 		113.5
(-3)
P 		145
(-2.1)
P 		185.6
(-1.1)
P 		153.2
(-1.9)
P 		225
B 267.9
(3)
P 		209.4
(0.7)
P 		118.1
(-3)
P 		160.5
(-1.3)
P 		201.8
(0.4)
P 		180.3
(-0.5)
P 		150
C 310.1
(3)
P 		176.5
(-1.3)
P 		155.9
(-1.9)
P 		122.3
(-3)
P 		199.6
(-0.5)
P 		205.7
(-0.3)
P 		188
avr 230.2
(2.4) 		241
(3) 		129.2
(-3) 		142.6
(-2.3) 		195.7
(0.6) 		179.7
(-0.3) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8798
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.9B NCBI
Target Description Y57G11C.9B /REP_DB=WormBase Gene ID /WP=CE24477 /TR=Q9U202 /GB=CAB54458.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070384 NCBI Caenorhabditis elegans Y57G11C.9b (Y57G11C.9) mRNA, complete cds. 11/11 A 
SNAP00000003476 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14787146:14790625:1 11/11 None
GENEFINDER00000003587 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14787146:14790625:1 11/11 None
Y57G11C.9b.2 ENSEMBL cdna:known chromosome:CEL140:IV:14787128:14791164:1 gene:Y57G11C.9 11/11 None
Y57G11C.9b.1 ENSEMBL cdna:known chromosome:CEL140:IV:14787130:14791164:1 gene:Y57G11C.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178401 3 1 NM_070384 174556_at (11), 174557_s_at (11), 186841_at (11), 190733_s_at (11)
NM_070385 174556_at (10), 174557_s_at (11), 190733_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14787151-14790631(+) 90.05 100.0
Public Domain and Genome References
Ensembl Y57G11C.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54458 Hypothetical protein Y57G11C.9b [Caenorhabditis elegans] ref|NP_502785.1| Y57G11C.9b [Caenorhabditis elegans] 0.0
blast CAB54458 Hypothetical protein Y57G11C.9b [Caenorhabditis elegans] ref|NP_502785.1| Y57G11C.9b [Caenorhabditis elegans] 1.0E-169
blast CAB54457 Hypothetical protein Y57G11C.9a [Caenorhabditis elegans] ref|NP_502786.1| Y57G11C.9a [Caenorhabditis elegans] 1.0E-105
blast CAB54457 Hypothetical protein Y57G11C.9a [Caenorhabditis elegans] ref|NP_502786.1| Y57G11C.9a [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 3.3E-11
Sequence
Target Sequence 
>C. ELEGANS:186841_AT
cgtttgtgccccgtcaaattggcagaatcgaaatagttatgccttcttctctgccggctc
cagtggtttcagctgctgctgcttctgcttctgccgctgctcacccagttgctatgaatg
ggtctgctatcagtggtggttcaagtatgcccgacattacaatgcaccccaacacgaata
aactctttggtcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTTTGTGCCCCGTCAAATTGGCAG 398 245 1403 Antisense
GCCCCGTCAAATTGGCAGAATCGAA 126 285 1410 Antisense
AAATAGTTATGCCTTCTTCTCTGCC 554 115 1433 Antisense
CTGCTCACCCAGTTGCTATGAATGG 632 237 1499 Antisense
AGTTGCTATGAATGGGTCTGCTATC 566 63 1509 Antisense
GGGTCTGCTATCAGTGGTGGTTCAA 111 497 1522 Antisense
AGTGGTGGTTCAAGTATGCCCGACA 517 59 1534 Antisense
GTATGCCCGACATTACAATGCACCC 37 455 1547 Antisense
TTACAATGCACCCCAACACGAATAA 405 683 1559 Antisense
GCACCCCAACACGAATAAACTCTTT 530 313 1566 Antisense
ACACGAATAAACTCTTTGGTCATCT 569 107 1574 Antisense
Sequence Source Affymetrix Proprietary Database