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[186840_s_at]

Description Y47G6A.26 /REP_DB=WormBase Gene ID /WP=CE22084 /TR=Q9N3R3 /GB=AAF60671.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 36      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 3
(-3)
A 		13.4
(-1.8)
A 		10.9
(-2.1)
A 		55.6
(3)
A 		53
B 53.2
(3)
A 		47
(2.2)
A 		8.9
(-3)
A 		17.4
(-1.8)
A 		44
C 46.4
(-0.5)
A 		57.9
(3)
A 		38.1
(-3)
A 		40.9
(-2.2)
A 		20
avr 34.2
(1.4) 		39.4
(3) 		19.3
(-3) 		38
(2.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 11
(-3)
A 		27.4
(-2.1)
A 		12
(-2.9)
A 		48.7
(-1)
A 		111.7
(2.5)
A 		121.5
(3)
P 		111
B 8.5
(-3)
A 		40.5
(-1.7)
A 		40.6
(-1.7)
A 		40.4
(-1.7)
A 		93.8
(0.6)
P 		152.4
(3)
P 		144
C 5.8
(-3)
A 		13.6
(-2.7)
A 		25.6
(-2.2)
A 		18.7
(-2.5)
A 		90.2
(0.4)
A 		154.3
(3)
P 		149
avr 8.4
(-3) 		27.2
(-2.2) 		26.1
(-2.2) 		35.9
(-1.8) 		98.6
(1) 		142.7
(3) 		134
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.1
(-3)
A 		2.9
(-1.5)
A 		2.8
(-1.5)
A 		8.1
(3)
A 		7
B 17
(3)
A 		11.6
(0.8)
A 		2.1
(-3)
A 		3.7
(-2.4)
A 		15
C 15.4
(2.3)
A 		16.6
(3)
A 		13.3
(1)
A 		6.9
(-3)
A 		10
avr 11.2
(3) 		10.4
(2.1) 		6.1
(-3) 		6.2
(-2.9) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 2
(-3)
A 		9.8
(-1.5)
A 		2.6
(-2.9)
A 		12.4
(-1)
A 		33.7
(3)
A 		29.6
(2.2)
P 		32
B 2.9
(-3)
A 		13.5
(-1.8)
A 		9.9
(-2.2)
A 		10.7
(-2.1)
A 		38.1
(0.9)
P 		56.8
(3)
P 		54
C 2.2
(-3)
A 		4.1
(-2.8)
A 		6.5
(-2.5)
A 		3.8
(-2.8)
A 		29.2
(0.3)
A 		51.7
(3)
P 		50
avr 2.4
(-3) 		9.1
(-2.1) 		6.3
(-2.5) 		9
(-2.1) 		33.7
(1.3) 		46
(3) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186840_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.290
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.26 NCBI
Target Description Y47G6A.26 /REP_DB=WormBase Gene ID /WP=CE22084 /TR=Q9N3R3 /GB=AAF60671.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058787(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058787 NCBI Caenorhabditis elegans Y47G6A.26 (Y47G6A.26) mRNA, complete cds. 11/11 None
SNAP00000033997 ENSEMBL cdna:SNAP chromosome:CEL140:I:3606468:3619638:-1 11/11 None
GENEFINDER00000034091 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3618950:3619638:-1 11/11 None
Y47G6A.26 ENSEMBL cdna:known chromosome:CEL140:I:3618950:3619638:-1 gene:Y47G6A.26 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3618949-3619638(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.26
Entrez Gene 171931 Entrez gene
SwissProt Q9N3R3 EMBL-EBI
WormBase CE22084 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491185 Y47G6A.25 [Caenorhabditis elegans] gb|AAF60670.2| Hypothetical protein Y47G6A.25 [Caenorhabditis elegans] 0.0
blast NP_491188 Y47G6A.26 [Caenorhabditis elegans] gb|AAF60671.1| Hypothetical protein Y47G6A.26 [Caenorhabditis elegans] 1.0E-105
blast NP_491188 Y47G6A.26 [Caenorhabditis elegans] gb|AAF60671.1| Hypothetical protein Y47G6A.26 [Caenorhabditis elegans] 3.0E-97
blast CAE60954 Hypothetical protein CBG04682 [Caenorhabditis briggsae] 2.0E-72
Sequence
Target Sequence 
>C. ELEGANS:186840_S_AT
agtatacacgcagagttcctcgtcctcgaagcaccctcgtaccaggaagacgtatgaccg
aaatgatgatgctccacgaggcgggaatcgatgaaactctcagctacctcgacgagcctt
ctcaagtctctactaggaactctaacactgcgattcaagcattcccggtaatgaatggga
ttcgagactctactgatgagcatccgatgcgcagtccagcaatgtcatcggaaggatccc
ctagaaatcgatcaggacgagatgtcgaagttcaggacgacgatgtttttgtcccaagta
tggcatcaactccaatatcgaaaaagtcgaagcttcatcccaacctggcaaagtccaagc
ttgtcgatcactcctgctctcgcccaaaacgaaaccgaattcctccgttgcgatactgga
ttggagagcgaccgttgtacagatatgatcagaacttctgtcgagagtttgtcgggatct
cggaagcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTATACACGCAGAGTTCCTCGTCC 536 61 23 Antisense
GATGATGCTCCACGAGGCGGGAATC 442 411 87 Antisense
AATCGATGAAACTCTCAGCTACCTC 54 169 108 Antisense
AGCCTTCTCAAGTCTCTACTAGGAA 704 81 137 Antisense
AACACTGCGATTCAAGCATTCCCGG 650 135 166 Antisense
TCCGATGCGCAGTCCAGCAATGTCA 145 587 225 Antisense
GACGACGATGTTTTTGTCCCAAGTA 527 379 298 Antisense
TTCATCCCAACCTGGCAAAGTCCAA 413 689 356 Antisense
TGCTCTCGCCCAAAACGAAACCGAA 674 579 397 Antisense
GAATTCCTCCGTTGCGATACTGGAT 647 323 419 Antisense
AGTTTGTCGGGATCTCGGAAGCCTT 482 61 488 Antisense
Sequence Source Affymetrix Proprietary Database