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[186839_at]

Description Y38C1BA.1 /REP_DB=WormBase Gene ID /WP=CE21573 /TR=Q9N529 /GB=AAF60503.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 21      6grp_total > 15      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 65.8
(-1)
P 		77
(3)
P 		60.1
(-3)
P 		71.3
(1)
A 		17
B 64.9
(-2.3)
P 		59.6
(-2.9)
P 		58.7
(-3)
A 		108.3
(3)
P 		50
C 70.4
(-1.2)
P 		83.7
(0.5)
P 		55.6
(-3)
P 		103.6
(3)
P 		48
avr 67
(-1.5) 		73.4
(-0.5) 		58.1
(-3) 		94.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 103.7
(3)
A 		43.6
(-2.8)
P 		65.4
(-0.7)
P 		41
(-3)
P 		59.2
(-1.3)
A 		54.9
(-1.7)
M 		63
B 72.8
(3)
P 		53.1
(0.1)
A 		32.7
(-2.9)
A 		62.7
(1.5)
A 		31.7
(-3)
A 		50.9
(-0.2)
A 		41
C 39.5
(-1.5)
M 		92.4
(3)
A 		52.1
(-0.4)
P 		41.7
(-1.3)
A 		41.2
(-1.4)
M 		22.1
(-3)
A 		70
avr 72
(3) 		63
(1.2) 		50.1
(-1.5) 		48.5
(-1.8) 		44
(-2.7) 		42.6
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 23.9
(3)
P 		16.7
(-0.2)
P 		15.7
(-0.6)
P 		10.4
(-3)
A 		14
B 20.7
(1.5)
P 		14.7
(-2.3)
P 		13.6
(-3)
A 		23.1
(3)
P 		10
C 23.3
(2.3)
P 		24.1
(3)
P 		19.4
(-1.3)
P 		17.5
(-3)
P 		7
avr 22.6
(3) 		18.5
(-0.8) 		16.2
(-3) 		17
(-2.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 19.1
(3)
A 		15.5
(0.5)
P 		14.2
(-0.4)
P 		10.4
(-3)
P 		17.9
(2.2)
A 		13.4
(-0.9)
M 		9
B 25.3
(3)
P 		17.7
(0.4)
A 		7.9
(-3)
A 		16.6
(0)
A 		12.9
(-1.3)
A 		19
(0.8)
A 		17
C 14.6
(-0.9)
M 		28.2
(3)
A 		13.3
(-1.3)
P 		8.4
(-2.7)
A 		13.3
(-1.3)
M 		7.4
(-3)
A 		21
avr 19.7
(2.4) 		20.5
(3) 		11.8
(-3) 		11.8
(-3) 		14.7
(-1) 		13.3
(-2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186839_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10889
Sequence Type Exemplar sequence
Representative Public ID Y38C1BA.1 NCBI
Target Description Y38C1BA.1 /REP_DB=WormBase Gene ID /WP=CE21573 /TR=Q9N529 /GB=AAF60503.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067735(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067735 NCBI Caenorhabditis elegans Y38C1BA.1 (Y38C1BA.1) mRNA, complete cds. 11/11 None
GENEFINDER00000017753 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1797659:1803980:-1 11/11 None
Y38C1BA.1 ENSEMBL cdna:known chromosome:CEL140:IV:1802104:1803980:-1 gene:Y38C1BA.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017746 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1802109-1803986(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38C1BA.1
Entrez Gene 189648 Entrez gene
SwissProt Q9N529 EMBL-EBI
WormBase CE21573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60503 Hypothetical protein Y38C1BA.1 [Caenorhabditis elegans] ref|NP_500136.1| Y38C1BA.1 [Caenorhabditis elegans] 1.0E-156
blast AAF60503 Hypothetical protein Y38C1BA.1 [Caenorhabditis elegans] ref|NP_500136.1| Y38C1BA.1 [Caenorhabditis elegans] 1.0E-154
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500136.1 4 13-32,47-69,76-98,102-121
Y38C1BA.1 4 13-32,47-69,76-98,102-121
GENEFINDER00000017753 4 11-33,48-70,77-99,103-122
Sequence
Target Sequence 
>C. ELEGANS:186839_AT
gggtcacgcgttgtgcaatatctggtggctatggtttatttatcaatgtattcatatcat
ttttattcacactaggatttttcaaaattgcaattttatgttttgggcaacagttaaaac
tatcacatacactattgactttttgatatgggtcccaaaggaattttggtgtccaatgct
tatttcactagttgttacttcagcaattttctattgtcaccaccgaaaacgctctcgagt
cagtgagctgatgtggacgtacgtggacgatgaaaatgatattcccgttaatatttgtga
cattcgaagaaatcctaaagctgttgtgggatggggagatcgcgacactaccgcagaacc
cgttgagtgctacctggcacccacaaaatgcgtgaagatcagtgggatggttggaatgat
tccggaaatgtcaatgactgataatatagcaaggattaacaaacatctgaaagagagatt
ggctgctgataagacacatggagggacttggccatgggtgaaggttactgtagatacacg
tgtcgctttggtttatatcaagtttcgggaggttgaggactcaactatgtgcttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGTCACGCGTTGTGCAATATCTGG 521 493 153 Antisense
GGTGTCCAATGCTTATTTCACTAGT 662 497 320 Antisense
GCAATTTTCTATTGTCACCACCGAA 394 323 355 Antisense
CCACCGAAAACGCTCTCGAGTCAGT 254 271 372 Antisense
GTGAGCTGATGTGGACGTACGTGGA 683 481 395 Antisense
TGGGATGGGGAGATCGCGACACTAC 616 553 479 Antisense
ACTACCGCAGAACCCGTTGAGTGCT 636 101 499 Antisense
CTACCTGGCACCCACAAAATGCGTG 544 225 522 Antisense
GAGGGACTTGGCCATGGGTGAAGGT 53 403 653 Antisense
GATACACGTGTCGCTTTGGTTTATA 323 423 685 Antisense
TGAGGACTCAACTATGTGCTTCAAT 58 567 726 Antisense
Sequence Source Affymetrix Proprietary Database