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[186838_at]

Description Y71F9AL.8 /REP_DB=WormBase Gene ID /WP=CE25560 /TR=Q9N4I2 /GB=AAF36006.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 97      4grp_high_8_8 > 14      6grp_total > 97      4grp_total > 02      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 321
1 2 3 4 range
A 139.9
(-3)
P 		144.3
(-2.9)
P 		140
(-3)
P 		418.7
(3)
P 		279
B 133.8
(-3)
P 		143.3
(-2.7)
A 		188.2
(-1.6)
P 		359.5
(3)
P 		226
C 123
(-3)
P 		144.2
(-2.6)
P 		143.4
(-2.6)
P 		443.9
(3)
P 		321
avr 132.2
(-3) 		143.9
(-2.7) 		157.2
(-2.5) 		407.4
(3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1189
1 2 3 4 5 6 range
A 92.3
(-3)
A 		137.4
(-2.7)
P 		197.6
(-2.3)
P 		332.2
(-1.4)
P 		823.6
(1.9)
P 		981.2
(3)
P 		889
B 116.5
(-3)
P 		153
(-2.8)
M 		220.5
(-2.4)
P 		497.9
(-0.7)
P 		685.4
(0.4)
P 		1133.3
(3)
P 		1017
C 103
(-3)
P 		115.7
(-2.9)
A 		171
(-2.7)
M 		388.7
(-1.5)
P 		629
(-0.3)
P 		1281.6
(3)
P 		1179
avr 103.9
(-3) 		135.4
(-2.8) 		196.4
(-2.5) 		406.3
(-1.2) 		712.7
(0.6) 		1132
(3) 		1028
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 50.9
(0.9)
P 		31.3
(-3)
P 		36.6
(-1.9)
P 		61.3
(3)
P 		30
B 42.7
(-1.9)
P 		35.4
(-3)
A 		43.6
(-1.8)
P 		76.6
(3)
P 		41
C 40.7
(-3)
P 		41.5
(-2.9)
P 		50
(-1.4)
P 		74.8
(3)
P 		34
avr 44.8
(-1.5) 		36.1
(-3) 		43.4
(-1.7) 		70.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 412
1 2 3 4 5 6 range
A 17
(-3)
A 		48.9
(-2.2)
P 		43
(-2.3)
P 		84.3
(-1.3)
P 		248.5
(3)
P 		238.9
(2.8)
P 		232
B 40.5
(-3)
P 		50.9
(-2.8)
M 		53.5
(-2.8)
P 		131.9
(-1.6)
P 		278.5
(0.7)
P 		422.6
(3)
P 		382
C 38.2
(-3)
P 		35.3
(-3)
A 		43.5
(-2.9)
M 		78.2
(-2.3)
P 		203.6
(-0.4)
P 		429
(3)
P 		394
avr 31.9
(-3) 		45
(-2.8) 		46.7
(-2.7) 		98.1
(-1.8) 		243.5
(0.8) 		363.5
(3) 		332
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.176
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.8 NCBI
Target Description Y71F9AL.8 /REP_DB=WormBase Gene ID /WP=CE25560 /TR=Q9N4I2 /GB=AAF36006.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058663(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058663 NCBI Caenorhabditis elegans Y71F9AL.8 (Y71F9AL.8) mRNA, complete cds. 11/11 None
GENEFINDER00000005903 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2878126:2880856:1 11/11 None
SNAP00000005887 ENSEMBL cdna:SNAP chromosome:CEL140:I:2878835:2887623:1 9/11 None
Y71F9AL.8 ENSEMBL cdna:known chromosome:CEL140:I:2878579:2880864:1 gene:Y71F9AL.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2878578-2880856(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9AL.8
Entrez Gene 171855 Entrez gene
SwissProt Q9N4I2 EMBL-EBI
WormBase CE25560 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36006 Hypothetical protein Y71F9AL.8 [Caenorhabditis elegans] ref|NP_491064.1| Y71F9AL.8 [Caenorhabditis elegans] 1.0E-177
blast AAF36006 Hypothetical protein Y71F9AL.8 [Caenorhabditis elegans] ref|NP_491064.1| Y71F9AL.8 [Caenorhabditis elegans] 1.0E-162
blast AAF36006 Hypothetical protein Y71F9AL.8 [Caenorhabditis elegans] ref|NP_491064.1| Y71F9AL.8 [Caenorhabditis elegans] 1.0E-125
blast CAE60590 Hypothetical protein CBG04226 [Caenorhabditis briggsae] 4.0E-17
blast CAE60590 Hypothetical protein CBG04226 [Caenorhabditis briggsae] 3.0E-11
Sequence
Target Sequence 
>C. ELEGANS:186838_AT
gcttggagcttcaagcggctccgacggctccgacgaccagcgcagcacaattgggcaaaa
caaaaagtcctggagcaagaactcaacggatcgaaagaaatgatgagttatcccgtgatg
tgttcgaaagttcttgtgcttcgacaattgtggagccagagcctccacaagaagagcctc
cacagagatcacacaattggaagacggaaatgcgaaaaatagccggccaagcagctcaag
caattaacgatttgatccgacagactgttgaaaataatgatttcaataagaaaatgttcg
ctgaactcgagaaccaacaaaatctagaccacctgtacggaaaaatgttcgacgatccaa
ataaagccgattggataatgattgatgtcaaaaagttcactgaaaaccaccttcgcatgc
aatatttccgtaaaatacgcgaagagctacacaaaagattcaccaatcagcatatcattc
gtgccgttttttgctttttccaattttttgagtattatgtgacagtttgtgttgatgagt
ccaccgacaactacattctgctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGGAGCTTCAAGCGGCTCCGAC 576 307 389 Antisense
ACGACCAGCGCAGCACAATTGGGCA 104 91 421 Antisense
GAGTTATCCCGTGATGTGTTCGAAA 227 397 493 Antisense
GAAGAGCCTCCACAGAGATCACACA 309 339 559 Antisense
AAAATAGCCGGCCAAGCAGCTCAAG 149 131 604 Antisense
ACGATTTGATCCGACAGACTGTTGA 427 91 635 Antisense
CAAAATCTAGACCACCTGTACGGAA 650 187 706 Antisense
AAACCACCTTCGCATGCAATATTTC 372 125 792 Antisense
ATCATTCGTGCCGTTTTTTGCTTTT 69 31 862 Antisense
GTTTGTGTTGATGAGTCCACCGACA 609 451 913 Antisense
TCCACCGACAACTACATTCTGCTAA 333 589 928 Antisense
Sequence Source Affymetrix Proprietary Database