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[186835_at]

Description Y113G7A.13 /REP_DB=WormBase Gene ID /WP=CE24142 /TR=Q9U2Y3 /GB=CAB60485.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 13      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 21.7
(-2.4)
A 		14.5
(-3)
A 		14
(-3)
A 		92.1
(3)
A 		78
B 56.9
(3)
A 		12.6
(-2.4)
A 		8.1
(-3)
A 		40.6
(1)
A 		49
C 10.3
(-0.7)
A 		10.4
(-0.6)
A 		8.1
(-3)
A 		13.9
(3)
A 		6
avr 29.6
(0) 		12.5
(-2.6) 		10.1
(-3) 		48.9
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 18.9
(-0.8)
A 		4.5
(-2.9)
A 		46.2
(3)
A 		3.6
(-3)
A 		35.9
(1.5)
A 		9.1
(-2.2)
A 		43
B 19.7
(-1.8)
A 		18.6
(-1.9)
A 		6.5
(-3)
A 		70.5
(3)
A 		12.8
(-2.4)
A 		9.4
(-2.7)
A 		64
C 9.2
(-3)
A 		33.6
(3)
A 		14.7
(-1.6)
A 		14.1
(-1.8)
A 		9.9
(-2.8)
A 		23.5
(0.5)
A 		24
avr 15.9
(-2.3) 		18.9
(-1.1) 		22.5
(0.3) 		29.4
(3) 		19.5
(-0.9) 		14
(-3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 7.9
(-0.2)
A 		3.1
(-3)
A 		3.7
(-2.7)
A 		13.5
(3)
A 		10
B 18.1
(3)
A 		3.1
(-2.6)
A 		1.9
(-3)
A 		8.7
(-0.5)
A 		16
C 3.4
(3)
A 		3
(0.8)
A 		2.8
(-0.3)
A 		2.3
(-3)
A 		1
avr 9.8
(3) 		3.1
(-2.7) 		2.8
(-3) 		8.2
(1.6) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 3.5
(-1.4)
A 		1.6
(-2.6)
A 		10.1
(2.6)
A 		0.9
(-3)
A 		10.8
(3)
A 		2.2
(-2.2)
A 		10
B 6.9
(-1.1)
A 		6.2
(-1.4)
A 		1.6
(-3)
A 		18.7
(3)
A 		5.2
(-1.7)
A 		3.5
(-2.3)
A 		17
C 3.4
(-2.5)
A 		10.3
(3)
A 		3.8
(-2.2)
A 		2.8
(-3)
A 		3.2
(-2.7)
A 		7.9
(1.1)
A 		8
avr 4.6
(-2.8) 		6
(0) 		5.2
(-1.6) 		7.5
(3) 		6.4
(0.8) 		4.5
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14299
Sequence Type Exemplar sequence
Representative Public ID Y113G7A.13 NCBI
Target Description Y113G7A.13 /REP_DB=WormBase Gene ID /WP=CE24142 /TR=Q9U2Y3 /GB=CAB60485.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075482 NCBI Caenorhabditis elegans Y113G7A.13 (Y113G7A.13) mRNA, complete cds. 11/11 None
GENEFINDER00000016741 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20146197:20146647:1 11/11 None
Y113G7A.13 ENSEMBL cdna:known chromosome:CEL140:V:20146197:20146685:1 gene:Y113G7A.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20146196-20146685(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7A.13
Entrez Gene 190961 Entrez gene
SwissProt Q9U2Y3 EMBL-EBI
WormBase CE24142 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60485 Hypothetical protein Y113G7A.13 [Caenorhabditis elegans] ref|NP_507883.1| Y113G7A.13 [Caenorhabditis elegans] 5.0E-34
blast CAB60485 Hypothetical protein Y113G7A.13 [Caenorhabditis elegans] ref|NP_507883.1| Y113G7A.13 [Caenorhabditis elegans] 2.0E-33
Sequence
Target Sequence 
>C. ELEGANS:186835_AT
atggatccgccaccaattattgatgtggacacatctcaaagcgatttctcaaacaacgag
gtgtcctcacagctcctctaccaagccaagcagggcattgaaccaaataatgtgtctaac
atcaggaatgagctaatgcgtggtcaacttggagaacctaatgagaacaaccgaccgccg
cctgtagatcgtagggacgttcctgagaataacgagcttggaaaactgcccgttcattca
acattggacaacttgagcacgctttctcctgagccagtttctacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGATCCGCCACCAATTATTGATG 539 51 13 Antisense
GGACACATCTCAAAGCGATTTCTCA 245 527 39 Antisense
CTCCTCTACCAAGCCAAGCAGGGCA 29 233 85 Antisense
GAGCTAATGCGTGGTCAACTTGGAG 679 387 142 Antisense
GAACCTAATGAGAACAACCGACCGC 561 499 166 Antisense
CGCCGCCTGTAGATCGTAGGGACGT 694 253 188 Antisense
GATCGTAGGGACGTTCCTGAGAATA 167 413 199 Antisense
ACGAGCTTGGAAAACTGCCCGTTCA 178 91 224 Antisense
ACTGCCCGTTCATTCAACATTGGAC 118 99 237 Antisense
TGGACAACTTGAGCACGCTTTCTCC 589 547 257 Antisense
CTTTCTCCTGAGCCAGTTTCTACAG 612 221 274 Antisense
Sequence Source Affymetrix Proprietary Database