[Home] | [Total List]

[186834_at]

Description VW02B12L.2 /REP_DB=WormBase Gene ID /WP=CE18981 /TR=Q9XXA1 /GB=CAA20333.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 15      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 9.5
(-3)
A 		9.6
(-2.9)
A 		10.7
(-2.4)
A 		20.9
(3)
A 		11
B 72.9
(3)
A 		7
(-3)
A 		11.5
(-2.6)
A 		67.9
(2.5)
A 		66
C 49
(3)
A 		16.6
(-3)
A 		45.7
(2.4)
A 		33.3
(0.1)
A 		32
avr 43.8
(3) 		11.1
(-3) 		22.6
(-0.9) 		40.7
(2.4) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 14.5
(-3)
A 		66.3
(2.6)
A 		63
(2.2)
A 		70.1
(3)
A 		63
(2.2)
A 		37
(-0.6)
A 		56
B 62.7
(3)
A 		36.1
(-0.1)
A 		50
(1.5)
A 		45.7
(1)
A 		11.2
(-3)
A 		15.1
(-2.5)
A 		52
C 74.8
(3)
A 		53.9
(1.2)
A 		70.1
(2.6)
A 		5
(-3)
A 		66.8
(2.3)
A 		62.2
(1.9)
A 		70
avr 50.7
(0.3) 		52.1
(0.7) 		61
(3) 		40.3
(-2.4) 		47
(-0.7) 		38.1
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 3.5
(3)
A 		2.1
(-3)
A 		2.8
(-0)
A 		3.1
(1.3)
A 		1
B 23.2
(3)
A 		1.7
(-3)
A 		2.7
(-2.7)
A 		14.5
(0.6)
A 		22
C 16.2
(3)
A 		4.8
(-3)
A 		15.9
(2.8)
A 		5.6
(-2.6)
A 		11
avr 14.3
(3) 		2.9
(-3) 		7.1
(-0.8) 		7.7
(-0.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 2.7
(-3)
A 		23.6
(3)
A 		13.7
(0.2)
A 		17.8
(1.3)
A 		19
(1.7)
A 		9
(-1.2)
A 		21
B 21.8
(3)
A 		12
(-0.4)
A 		12.1
(-0.4)
A 		12.1
(-0.4)
A 		4.6
(-3)
A 		5.6
(-2.7)
A 		17
C 27.7
(3)
A 		16.5
(0.5)
A 		17.9
(0.8)
A 		1
(-3)
A 		21.6
(1.6)
A 		20.8
(1.4)
A 		27
avr 17.4
(3) 		17.4
(3) 		14.6
(0.6) 		10.3
(-3) 		15.1
(1.1) 		11.8
(-1.7) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2765
Sequence Type Exemplar sequence
Representative Public ID VW02B12L.2 NCBI
Target Description VW02B12L.2 /REP_DB=WormBase Gene ID /WP=CE18981 /TR=Q9XXA1 /GB=CAA20333.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064036 NCBI Caenorhabditis elegans VW02B12L.2 (VW02B12L.2) mRNA, complete cds. 11/11 None
GENEFINDER00000004854 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11439203:11439617:-1 9/11 None
VW02B12L.2 ENSEMBL cdna:known chromosome:CEL140:II:11439203:11439662:-1 gene:VW02B12L.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004850 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11439199-11439659(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl VW02B12L.2
Entrez Gene 189071 Entrez gene
SwissProt Q9XXA1 EMBL-EBI
WormBase CE18981 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA20333 Hypothetical protein VW02B12L.2 [Caenorhabditis elegans] ref|NP_496437.1| VW02B12L.2 [Caenorhabditis elegans] 6.0E-66
blast CAA20333 Hypothetical protein VW02B12L.2 [Caenorhabditis elegans] ref|NP_496437.1| VW02B12L.2 [Caenorhabditis elegans] 1.0E-56
blast AAC02601 Hypothetical protein F57H12.5 [Caenorhabditis elegans] ref|NP_501331.1| F57H12.5 [Caenorhabditis elegans] 2.0E-43
blast AAP68931 Hypothetical protein ZK783.5 [Caenorhabditis elegans] ref|NP_001023034.1| ZK783.5 [Caenorhabditis elegans] 1.0E-42
blast AAC02601 Hypothetical protein F57H12.5 [Caenorhabditis elegans] ref|NP_501331.1| F57H12.5 [Caenorhabditis elegans] 4.0E-38
blast AAP68931 Hypothetical protein ZK783.5 [Caenorhabditis elegans] ref|NP_001023034.1| ZK783.5 [Caenorhabditis elegans] 3.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.5E-15
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 8.8E-16
Sequence
Target Sequence 
>C. ELEGANS:186834_AT
atccatcaattccactcggagcaacaatttcgaagcctgggaatgtgtgtggtgagcact
tttggctctggtagagcatgtacctttataggtgcgctctacgcaattcaccagctgaac
aatggagttgagcctaatatcttcgagatcatgaaaactatcaaacagcagcgccctgga
gcaatcgagtcgttcccacaatattcaggtgtatatgcaatcgttttagactacatttcg
cgcaaacgcggaggaaagtctgatcctgttaacaaatacataaatcgtttcctcgctgat
ctcacggagatattgccagcatgctcaacgttgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCCATCAATTCCACTCGGAGCAAC 380 39 16 Antisense
GGAGCAACAATTTCGAAGCCTGGGA 408 519 33 Antisense
GTGGTGAGCACTTTTGGCTCTGGTA 309 489 64 Antisense
TAGGTGCGCTCTACGCAATTCACCA 390 653 104 Antisense
GGAGTTGAGCCTAATATCTTCGAGA 626 517 139 Antisense
GAAAACTATCAAACAGCAGCGCCCT 344 355 168 Antisense
TGGAGCAATCGAGTCGTTCCCACAA 560 549 192 Antisense
AATCGTTTTAGACTACATTTCGCGC 411 165 234 Antisense
AATACATAAATCGTTTCCTCGCTGA 160 171 290 Antisense
TTTCCTCGCTGATCTCACGGAGATA 564 669 303 Antisense
TATTGCCAGCATGCTCAACGTTGCC 709 661 326 Antisense
Sequence Source Affymetrix Proprietary Database