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[186833_s_at]

Description Y113G7A.6B /REP_DB=WormBase Gene ID /WP=CE23278 /TR=Q9U2Y9 /GB=CAB60479.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 33      6grp_total > 34      4grp_total > 38      6grp_cgc > 21      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 298.2
(3)
P 		237.5
(-0.1)
P 		179.1
(-3)
P 		232.5
(-0.3)
P 		119
B 308.7
(3)
P 		210.5
(-0.5)
P 		141.4
(-3)
A 		190.4
(-1.2)
P 		167
C 320.8
(3)
P 		237.5
(-0.8)
P 		196.3
(-2.7)
P 		188.8
(-3)
P 		132
avr 309.2
(3) 		228.5
(-0.5) 		172.3
(-3) 		203.9
(-1.6) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 256.6
(3)
P 		210.4
(1.1)
P 		203.4
(0.8)
A 		155.5
(-1.1)
A 		112
(-2.9)
A 		109.8
(-3)
A 		147
B 253.6
(3)
P 		192.2
(1.1)
P 		181.1
(0.7)
P 		62.1
(-3)
A 		80.6
(-2.4)
A 		121.6
(-1.1)
P 		192
C 184.7
(2.2)
P 		147.8
(-0.2)
A 		196.4
(3)
M 		134
(-1.2)
P 		113.2
(-2.6)
A 		106.6
(-3)
P 		90
avr 231.6
(3) 		183.5
(0.8) 		193.6
(1.2) 		117.2
(-2.3) 		101.9
(-3) 		112.7
(-2.5) 		130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 108.6
(3)
P 		51.5
(-1.6)
P 		46.8
(-2)
P 		34
(-3)
P 		75
B 98.4
(3)
P 		52
(-1.2)
P 		32.8
(-3)
A 		40.6
(-2.3)
P 		66
C 106.2
(3)
P 		68.3
(-0.1)
P 		68.4
(-0)
P 		31.8
(-3)
P 		74
avr 104.4
(3) 		57.3
(-1.1) 		49.3
(-1.8) 		35.5
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 47.3
(-0.4)
P 		74.8
(3)
P 		44.3
(-0.8)
A 		39.4
(-1.4)
A 		33.8
(-2.1)
A 		26.7
(-3)
A 		48
B 88.2
(3)
P 		64
(1)
P 		44
(-0.7)
P 		16.4
(-3)
A 		32.7
(-1.6)
A 		45.4
(-0.6)
P 		72
C 68.4
(3)
P 		45.1
(-0.4)
A 		50
(0.3)
M 		27
(-3)
P 		36.6
(-1.6)
A 		35.7
(-1.7)
P 		41
avr 68
(3) 		61.3
(2) 		46.1
(-0.3) 		27.6
(-3) 		34.4
(-2) 		35.9
(-1.8) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186833_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13210
Sequence Type Exemplar sequence
Representative Public ID Y113G7A.6B NCBI
Target Description Y113G7A.6B /REP_DB=WormBase Gene ID /WP=CE23278 /TR=Q9U2Y9 /GB=CAB60479.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029042(11), NM_001029041(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029042 NCBI Caenorhabditis elegans abnormal ThermoTaXis family member (ttx-1) (ttx-1) mRNA, complete cds. 11/11 None
NM_001029041 NCBI Caenorhabditis elegans abnormal ThermoTaXis family member (ttx-1) (ttx-1) mRNA, complete cds. 10/11 None
GENEFINDER00000016728 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20052083:20055352:-1 11/11 None
Y113G7A.6b ENSEMBL cdna:known chromosome:CEL140:V:20051730:20062171:-1 gene:Y113G7A.6 11/11 A 
Y113G7A.6a ENSEMBL cdna:known chromosome:CEL140:V:20051730:20062171:-1 gene:Y113G7A.6 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20052082-20062171(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y113G7A.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60478 Hypothetical protein Y113G7A.6a [Caenorhabditis elegans] ref|NP_001024212.1| abnormal ThermoTaXis family member (ttx-1) [Caenorhabditis elegans] 1.0E-150
blast AAL12001 homeodomain protein TTX-1 [Caenorhabditis elegans] 1.0E-141
blast CAB60479 Hypothetical protein Y113G7A.6b [Caenorhabditis elegans] ref|NP_001024213.1| abnormal ThermoTaXis family member (ttx-1) [Caenorhabditis elegans] 1.0E-119
blast AAL12000 homeodomain protein TTX-1 [Caenorhabditis elegans] 1.0E-116
blast CAB60478 Hypothetical protein Y113G7A.6a [Caenorhabditis elegans] ref|NP_001024212.1| abnormal ThermoTaXis family member (ttx-1) [Caenorhabditis elegans] 1.0E-112
blast CAB60479 Hypothetical protein Y113G7A.6b [Caenorhabditis elegans] ref|NP_001024213.1| abnormal ThermoTaXis family member (ttx-1) [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.99999995490641E-26
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 3.0000000817356E-27
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 8.00000002536861E-28
Pfam IPR001356 EMBL-EBI Homeobox 6.6E-28
Pfam IPR001356 EMBL-EBI Homeobox 6.6E-28
Pfam IPR001356 EMBL-EBI Homeobox 6.6E-28
Sequence
Target Sequence 
>C. ELEGANS:186833_S_AT
cacctcgggttcccgtcgaatgttggaagccacagctttttacagtcaaatatgtatatt
ccatcgagtttgtcggattgtccaactgctactatggggagcatgtcgtggaatgctaac
caaccgggattttctagaaaacaacgtcgggaacggaccacatttacacggaatcaactt
gaaatcctggagagttactttgtaaaaacccgctatccggatattttcatgcgggaagac
atggcccacaaaattcaactccccgagagcagagttcaggtttggttcaaaaaccggcgg
gcaaaggccaggcagcagaagaaaacgctggcgcccagtaattccggagtgacgtgttct
ggaaataatggatcaaccggaggtggatcttcaaatggatctactgggagtgaagttcag
ccgtcatccccggccaccaccgacagtgagctaaaattttcggaagttattaaagaagaa
tgtgatgaacaatcaattagtccgtcagctgacgatcagaaaggcccagctaccctgcgt
acgactttcagtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCTCGGGTTCCCGTCGAATGTTG 212 159 307 Antisense
GAAGCCACAGCTTTTTACAGTCAAA 347 345 332 Antisense
GTTTGTCGGATTGTCCAACTGCTAC 565 451 374 Antisense
GAATGCTAACCAACCGGGATTTTCT 369 323 417 Antisense
GAACGGACCACATTTACACGGAATC 420 347 457 Antisense
AAACCCGCTATCCGGATATTTTCAT 181 127 512 Antisense
GAAAACGCTGGCGCCCAGTAATTCC 45 355 627 Antisense
GTAATTCCGGAGTGACGTGTTCTGG 481 463 644 Antisense
GGGAGTGAAGTTCAGCCGTCATCCC 391 495 712 Antisense
TGACGATCAGAAAGGCCCAGCTACC 544 569 816 Antisense
CTACCCTGCGTACGACTTTCAGTAC 403 219 836 Antisense
Sequence Source Affymetrix Proprietary Database