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[186832_at]

Description F27E5.1 /REP_DB=WormBase Gene ID /WP=CE01562 /TR=SW:Q09551 /GB=CAA88464.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 33      4grp_high_8_8 > 58      6grp_highest_nonorm > 33      6grp_total > 52      4grp_total > 61      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 921
1 2 3 4 range
A 1534.4
(3)
P 		1215.6
(0.7)
P 		1291.3
(1.3)
P 		691.2
(-3)
P 		843
B 1281.7
(3)
P 		1180.3
(2.1)
P 		1181.5
(2.1)
P 		640.7
(-3)
P 		641
C 1345.4
(3)
P 		1119.9
(1.2)
P 		1196.9
(1.8)
P 		613.4
(-3)
P 		732
avr 1387.2
(3) 		1171.9
(1.3) 		1223.2
(1.7) 		648.4
(-3) 		739

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1746
1 2 3 4 5 6 range
A 1677
(-1.1)
P 		1989.3
(0.1)
P 		2818.3
(3)
P 		2121.6
(0.5)
P 		1539.3
(-1.5)
P 		1127.5
(-3)
P 		1691
B 1970.5
(0.7)
P 		2157.1
(1.5)
P 		2488.7
(3)
P 		1683.6
(-0.6)
P 		1736.8
(-0.3)
P 		1138.3
(-3)
P 		1350
C 1654
(-1.2)
P 		1802.6
(-0.7)
P 		2873
(3)
P 		2090.1
(0.3)
P 		1720.5
(-1)
P 		1150.5
(-3)
P 		1723
avr 1767.2
(-0.6) 		1983
(0.2) 		2726.7
(3) 		1965.1
(0.1) 		1665.5
(-1) 		1138.8
(-3) 		1588
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 458
1 2 3 4 range
A 558.7
(3)
P 		263.9
(-0.9)
P 		337.6
(0.1)
P 		101.2
(-3)
P 		458
B 408.7
(3)
P 		291.5
(0.4)
P 		273.8
(0)
P 		136.5
(-3)
P 		272
C 445.4
(3)
P 		322
(0.8)
P 		417.1
(2.5)
P 		103.4
(-3)
P 		342
avr 470.9
(3) 		292.5
(0) 		342.8
(0.8) 		113.7
(-3) 		357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 309.1
(-2.5)
P 		707.5
(3)
P 		613.8
(1.7)
P 		538.1
(0.7)
P 		464.5
(-0.4)
P 		274.5
(-3)
P 		433
B 685.6
(2.3)
P 		718
(3)
P 		604.3
(0.7)
P 		445.9
(-2.6)
P 		705.6
(2.7)
P 		424.5
(-3)
P 		294
C 613.1
(1)
P 		550
(-0.1)
P 		731.2
(3)
P 		420.3
(-2.4)
P 		556.7
(-0)
P 		385.1
(-3)
P 		346
avr 535.9
(0.5) 		658.5
(3) 		649.8
(2.8) 		468.1
(-0.8) 		575.6
(1.3) 		361.4
(-3) 		297
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3776
Sequence Type Exemplar sequence
Representative Public ID F27E5.1 NCBI
Target Description F27E5.1 /REP_DB=WormBase Gene ID /WP=CE01562 /TR=SW:Q09551 /GB=CAA88464.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063786 NCBI Caenorhabditis elegans F27E5.1 (F27E5.1) mRNA, complete cds. 11/11 None
SNAP00000023300 ENSEMBL cdna:SNAP chromosome:CEL140:II:10139510:10141257:1 11/11 None
GENEFINDER00000023303 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10139510:10141257:1 11/11 None
F27E5.1 ENSEMBL cdna:known chromosome:CEL140:II:10139510:10141257:1 gene:F27E5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10139506-10141254(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F27E5.1
Entrez Gene 185021 Entrez gene
SwissProt Q09551 EMBL-EBI
WormBase CE01562 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88464 Hypothetical protein F27E5.1 [Caenorhabditis elegans] ref|NP_496187.1| F27E5.1 [Caenorhabditis elegans] sp|Q09551|YQV1_CAEEL Hypothetical protein F27E5.1 in chromosome II precursor 0.0
blast CAE57836 Hypothetical protein CBG00863 [Caenorhabditis briggsae] 0.0
blast CAE69316 Hypothetical protein CBG15381 [Caenorhabditis briggsae] 4.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR003199 EMBL-EBI Choloylglycine hydrolase 1.9E-8
Sequence
Target Sequence 
>C. ELEGANS:186832_AT
gttcaaaggatctactcttgccgggcacgttggagttttgacagccatgaaaccacacaa
attctcattgtccatgaacgccaaagtccagcctgatatcatcaatgttgccaaatggta
catgggagcttatgagaacactgatcttcaattcgtcatgtactttgatcgctggctatt
cgaaaactgtgacgatttccagtgtgctcgcgaaaagatcgccggtgtcaaactgttgac
aggcgcttatttcattctcggtggagccaatccgggtgagggaagtgtgctcgtgagaaa
cacgacatcagttcaatttgagaggaagttattcgatggagctaacgattggttcttgtt
gcagactaattatgatcctgataaggatccactttttattgacaaccgtcgtgaccctgg
aaacgcctgcatgaataagcttactcgcgccaatgttggaatgaagggaatcttcacggt
gctctcctccaagccaaatcttaacaagactactgtccacactgtcattatgtctgtcac
caagggctacttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAAAGGATCTACTCTTGCCGGG 399 443 621 Antisense
TGCCGGGCACGTTGGAGTTTTGACA 701 583 639 Antisense
TCCATGAACGCCAAAGTCCAGCCTG 273 589 691 Antisense
CATGTACTTTGATCGCTGGCTATTC 452 209 777 Antisense
TGACGATTTCCAGTGTGCTCGCGAA 203 571 810 Antisense
AAGATCGCCGGTGTCAAACTGTTGA 339 155 835 Antisense
GTTGACAGGCGCTTATTTCATTCTC 382 439 855 Antisense
GATCCACTTTTTATTGACAACCGTC 365 415 1006 Antisense
CTCTCCTCCAAGCCAAATCTTAACA 103 231 1102 Antisense
AAGACTACTGTCCACACTGTCATTA 39 153 1126 Antisense
TATGTCTGTCACCAAGGGCTACTTC 408 653 1149 Antisense
Sequence Source Affymetrix Proprietary Database