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[186831_s_at]

Description Y113G7A.12 /REP_DB=WormBase Gene ID /WP=CE24141 /TR=Q9U2Y5 /GB=CAB60483.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 08      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 6.5
(-2.9)
A 		11
(-2.6)
A 		5.3
(-3)
A 		92.6
(3)
P 		87
B 8.5
(-3)
A 		9.4
(-2.9)
A 		59.8
(3)
A 		32.9
(-0.1)
A 		51
C 8.9
(-2.9)
A 		7.5
(-3)
A 		10.8
(-2.7)
A 		76.4
(3)
P 		69
avr 8
(-3) 		9.3
(-2.9) 		25.3
(-1.2) 		67.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 38.8
(3)
A 		9.7
(-2.8)
A 		17.1
(-1.4)
A 		10.7
(-2.6)
A 		8.9
(-3)
A 		32.1
(1.7)
A 		30
B 5.4
(-3)
A 		12.5
(-2.1)
A 		50.5
(3)
A 		46.4
(2.5)
A 		5.9
(-2.9)
A 		15
(-1.7)
A 		45
C 6.9
(-2.9)
A 		50.4
(3)
A 		24.1
(-0.6)
A 		13.4
(-2)
A 		6.1
(-3)
A 		25.6
(-0.4)
A 		44
avr 17
(-0.5) 		24.2
(1.4) 		30.6
(3) 		23.5
(1.2) 		7
(-3) 		24.2
(1.4) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 2.4
(-2.5)
A 		2.4
(-2.5)
A 		1.4
(-3)
A 		13.6
(3)
P 		12
B 2.7
(-2.8)
A 		2.3
(-3)
A 		13.9
(3)
A 		7
(-0.6)
A 		12
C 2.9
(-2.6)
A 		2.1
(-3)
A 		3.8
(-2.1)
A 		12.9
(3)
P 		11
avr 2.7
(-2.7) 		2.3
(-3) 		6.4
(-0.2) 		11.2
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 7.2
(2.3)
A 		3.5
(-2.1)
A 		3.7
(-1.8)
A 		2.7
(-3)
A 		2.7
(-3)
A 		7.8
(3)
A 		5
B 1.9
(-3)
A 		4.2
(-1.7)
A 		12.3
(3)
A 		12.3
(3)
A 		2.4
(-2.7)
A 		5.6
(-0.9)
A 		10
C 2.5
(-2.8)
A 		15.4
(3)
A 		6.1
(-1.2)
A 		2.7
(-2.7)
A 		2
(-3)
A 		8.6
(-0)
A 		13
avr 3.9
(-1.3) 		7.7
(3) 		7.4
(2.7) 		5.9
(1) 		2.4
(-3) 		7.3
(2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186831_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14189
Sequence Type Exemplar sequence
Representative Public ID Y113G7A.12 NCBI
Target Description Y113G7A.12 /REP_DB=WormBase Gene ID /WP=CE24141 /TR=Q9U2Y5 /GB=CAB60483.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075483(11), NM_075481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075483 NCBI Caenorhabditis elegans F19B2.7 (F19B2.7) mRNA, complete cds. 11/11 A 
NM_075481 NCBI Caenorhabditis elegans Y113G7A.12 (Y113G7A.12) mRNA, complete cds. 11/11 A 
SNAP00000019284 ENSEMBL cdna:SNAP chromosome:CEL140:V:20151681:20153308:1 11/11 None
GENEFINDER00000019295 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20149486:20153308:1 11/11 None
Y113G7A.12 ENSEMBL cdna:known chromosome:CEL140:V:20142244:20144802:1 gene:Y113G7A.12 11/11 A 
F19B2.7 ENSEMBL cdna:known chromosome:CEL140:V:20147014:20153308:1 gene:F19B2.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016743 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20142243-20144831(+) 96.37 100.0
Public Domain and Genome References
Gene Title

Ensembl Y113G7A.12
F19B2.7
Entrez Gene 184665 Entrez gene
190960 Entrez gene
SwissProt Q9XXS5 EMBL-EBI
Q6EUT5 EMBL-EBI
WormBase CE20699 Wormbase
CE36453 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4176 ATP-dependent peptidase activity inferred from electronic annotation QuickGO AmiGO
4252 serine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16274 Hypothetical protein F19B2.7 [Caenorhabditis elegans] ref|NP_507884.1| F19B2.7 [Caenorhabditis elegans] 0.0
blast CAA16274 Hypothetical protein F19B2.7 [Caenorhabditis elegans] ref|NP_507884.1| F19B2.7 [Caenorhabditis elegans] 1.0E-105
blast CAA16274 Hypothetical protein F19B2.7 [Caenorhabditis elegans] ref|NP_507884.1| F19B2.7 [Caenorhabditis elegans] 2.0E-70
blast CAH04763 Hypothetical protein Y113G7A.12 [Caenorhabditis elegans] ref|NP_507882.2| Y113G7A.12 [Caenorhabditis elegans] 9.0E-45
blast NP_494509 F14D2.7 [Caenorhabditis elegans] gb|AAB94961.1| Hypothetical protein F14D2.7 [Caenorhabditis elegans] 3.0E-21
blast T34042 hypothetical protein F43E2.10 - Caenorhabditis elegans 5.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186831_S_AT
gaagagggcgaagtgctccctgtgagtgatattgtcgacatggtcacgcattgcttcgat
gagaacattgaatccgtgattgtgccgttgtctaactactctgaaataccggagctacta
aagctcagagttgaagtccacccagtgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAGGGCGAAGTGCTCCCTGTGA 255 339 406 Antisense
GCGAAGTGCTCCCTGTGAGTGATAT 231 289 413 Antisense
GCTCCCTGTGAGTGATATTGTCGAC 399 299 420 Antisense
GATATTGTCGACATGGTCACGCATT 511 427 433 Antisense
GTCGACATGGTCACGCATTGCTTCG 223 475 439 Antisense
GACATGGTCACGCATTGCTTCGATG 403 369 442 Antisense
ATGGTCACGCATTGCTTCGATGAGA 217 51 445 Antisense
GTCACGCATTGCTTCGATGAGAACA 509 465 448 Antisense
GATGAGAACATTGAATCCGTGATTG 494 411 463 Antisense
CTCAGAGTTGAAGTCCACCCAGTGA 202 229 529 Antisense
CAGAGTTGAAGTCCACCCAGTGAAA 15 207 531 Antisense
Sequence Source Affymetrix Proprietary Database