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[186830_at]

Description Y113G7A.12 /REP_DB=WormBase Gene ID /WP=CE24141 /TR=Q9U2Y5 /GB=CAB60483.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 61      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.7
(0.3)
A 		4.7
(-2)
A 		3.8
(-3)
A 		9
(3)
A 		5
B 3.2
(-3)
A 		6.1
(0.8)
A 		6.9
(1.8)
A 		7.8
(3)
A 		5
C 3
(-3)
A 		6.8
(-1)
A 		14.5
(3)
A 		6.6
(-1.1)
A 		12
avr 4.3
(-3) 		5.9
(-0.7) 		8.4
(3) 		7.8
(2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 4.2
(-2.7)
A 		4.2
(-2.7)
A 		29.6
(3)
A 		11.7
(-1)
A 		14.1
(-0.5)
A 		3
(-3)
A 		27
B 4.4
(-2.4)
A 		4
(-2.7)
A 		8
(-0.2)
A 		13
(3)
A 		9.4
(0.7)
A 		3.5
(-3)
A 		10
C 27
(3)
A 		6.4
(-1.9)
A 		23.9
(2.3)
A 		25.9
(2.7)
A 		5.7
(-2.1)
A 		1.8
(-3)
A 		25
avr 11.9
(0.1) 		4.9
(-2.3) 		20.5
(3) 		16.9
(1.8) 		9.7
(-0.7) 		2.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 2.4
(3)
A 		1
(-3)
A 		1
(-3)
A 		1.3
(-1.7)
A 		1
B 1
(-3)
A 		1.5
(1.3)
A 		1.6
(2.1)
A 		1.7
(3)
A 		1
C 1
(-3)
A 		2
(-1.5)
A 		5
(3)
A 		1.1
(-2.9)
A 		4
avr 1.5
(-2.5) 		1.5
(-2.5) 		2.5
(3) 		1.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.8
(-2.9)
A 		1.5
(-2.2)
A 		6.5
(3)
A 		3
(-0.6)
A 		4.3
(0.7)
A 		0.7
(-3)
A 		6
B 1.5
(-2.5)
A 		1.3
(-3)
A 		1.9
(-1.6)
A 		3.5
(2.3)
A 		3.8
(3)
A 		1.3
(-3)
A 		3
C 10
(3)
A 		1.9
(-2.2)
A 		6.1
(0.5)
A 		5.2
(-0.1)
A 		1.9
(-2.2)
A 		0.6
(-3)
A 		9
avr 4.1
(1.9) 		1.6
(-1.9) 		4.8
(3) 		3.9
(1.6) 		3.3
(0.7) 		0.9
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14189
Sequence Type Exemplar sequence
Representative Public ID Y113G7A.12 NCBI
Target Description Y113G7A.12 /REP_DB=WormBase Gene ID /WP=CE24141 /TR=Q9U2Y5 /GB=CAB60483.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075481(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075481 NCBI Caenorhabditis elegans Y113G7A.12 (Y113G7A.12) mRNA, complete cds. 10/11 A 
Y113G7A.12 ENSEMBL cdna:known chromosome:CEL140:V:20142244:20144802:1 gene:Y113G7A.12 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016743 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20142243-20144831(+) 96.37 100.0
Public Domain and Genome References
Gene Title
Ensembl Y113G7A.12
Entrez Gene 190960 Entrez gene
SwissProt Q6EUT5 EMBL-EBI
WormBase CE36453 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04763 Hypothetical protein Y113G7A.12 [Caenorhabditis elegans] ref|NP_507882.2| Y113G7A.12 [Caenorhabditis elegans] 9.0E-45
Sequence
Target Sequence 
>C. ELEGANS:186830_AT
gaactgtccgaaagcagttgctggaagacttgcaaataatgaagagagaagggagctgaa
gcgacaacgagaagcggggatgatagttgatgagccaaaaacaaagcacaaaatgacgct
cagatctgcagcgaaggtatcgatttttaccgaaactaatctgaaattatataatttttt
tattgtaaagcaatggtttatacacttactttacatttcagtaaaactttttttgaaaag
aaaaagtggaaatagcggcggagtcgcttctgcaatagcgattgaagcagcaattcttgg
aatacgtgtaccaacttctattgctgtgactggtgctataaatgaagagggcgaagtgct
ccctgtgagtgatattgtcgacatggtcacgcattgcttcgatgagaacattgaatccgt
gattgtgccgttgtctaactactctgaaataccggagctact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTGTCCGAAAGCAGTTGCTGGA 47 349 63 Antisense
GAAGCGACAACGAGAAGCGGGGATG 647 343 120 Antisense
GCGGGGATGATAGTTGATGAGCCAA 213 293 136 Antisense
ATGACGCTCAGATCTGCAGCGAAGG 293 45 175 Antisense
GTTTATACACTTACTTTACATTTCA 490 449 258 Antisense
ATAGCGGCGGAGTCGCTTCTGCAAT 467 21 314 Antisense
ATACGTGTACCAACTTCTATTGCTG 570 23 364 Antisense
TCTATTGCTGTGACTGGTGCTATAA 39 615 379 Antisense
GAATCCGTGATTGTGCCGTTGTCTA 141 331 475 Antisense
GATTGTGCCGTTGTCTAACTACTCT 567 433 483 Antisense
ACTACTCTGAAATACCGGAGCTACT 221 69 500 Antisense
Sequence Source Affymetrix Proprietary Database