[Home] | [Total List]

[186828_at]

Description Y105C5A.17 /REP_DB=WormBase Gene ID /WP=CE24055 /TR=Q9U321 /GB=CAB60304.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 93      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_total > 85      4grp_total > 03      6grp_high1_sub > 04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 89
(-2.8)
P 		88.8
(-2.8)
P 		79.7
(-3)
P 		355.6
(3)
P 		276
B 97.3
(-0.8)
P 		47.8
(-3)
P 		75.6
(-1.8)
P 		184.3
(3)
P 		137
C 100.2
(-1.7)
P 		79.2
(-2)
P 		25.9
(-3)
P 		357.3
(3)
P 		331
avr 95.5
(-2.1) 		71.9
(-2.7) 		60.4
(-3) 		299.1
(3) 		239

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 88.1
(2.7)
M 		48.2
(-3)
P 		90.1
(3)
P 		75.6
(0.9)
P 		69.7
(0.1)
P 		80.9
(1.7)
M 		42
B 70.8
(3)
P 		59.3
(1.4)
P 		27.8
(-3)
P 		64
(2.1)
P 		66.6
(2.4)
P 		65.8
(2.3)
P 		43
C 39.1
(-3)
P 		58.8
(-1.2)
P 		53.8
(-1.6)
P 		103.8
(3)
P 		82.7
(1)
P 		73.4
(0.2)
P 		65
avr 66
(-0.5) 		55.4
(-3) 		57.2
(-2.6) 		81.1
(3) 		73
(1.1) 		73.4
(1.2) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 32.4
(-0.6)
P 		19.3
(-3)
P 		20.8
(-2.7)
P 		52
(3)
P 		33
B 31
(1.2)
P 		11.8
(-3)
P 		17.5
(-1.8)
P 		39.3
(3)
P 		28
C 33.2
(-0.2)
P 		22.8
(-1.4)
P 		9
(-3)
P 		60.2
(3)
P 		51
avr 32.2
(-0.2) 		18
(-2.6) 		15.8
(-3) 		50.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 16.2
(-3)
M 		17.1
(-1.9)
P 		19.6
(1.3)
P 		19.2
(0.7)
P 		21
(3)
P 		19.7
(1.4)
M 		5
B 24.6
(2.3)
P 		19.7
(0.8)
P 		6.8
(-3)
P 		17
(0)
P 		27.1
(3)
P 		24.5
(2.2)
P 		20
C 14.5
(-2.6)
P 		17.9
(-1.1)
P 		13.7
(-3)
P 		20.9
(0.3)
P 		26.7
(3)
P 		24.6
(2)
P 		13
avr 18.4
(-0.4) 		18.2
(-0.5) 		13.4
(-3) 		19
(-0.1) 		24.9
(3) 		22.9
(2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8422
Sequence Type Exemplar sequence
Representative Public ID Y105C5A.17 NCBI
Target Description Y105C5A.17 /REP_DB=WormBase Gene ID /WP=CE24055 /TR=Q9U321 /GB=CAB60304.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070484(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070484 NCBI Caenorhabditis elegans Y105C5A.17 (Y105C5A.17) mRNA, complete cds. 11/11 None
GENEFINDER00000033777 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:15716982:15728875:1 11/11 None
Y105C5A.17 ENSEMBL cdna:known chromosome:CEL140:IV:15723173:15728875:1 gene:Y105C5A.17 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15723178-15728881(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105C5A.17
Entrez Gene 190880 Entrez gene
SwissProt Q9U321 EMBL-EBI
WormBase CE24055 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60304 Hypothetical protein Y105C5A.17 [Caenorhabditis elegans] ref|NP_502885.1| Y105C5A.17 [Caenorhabditis elegans] 0.0
blast T31575 hypothetical protein Y105C5A.r - Caenorhabditis elegans 0.0
blast CAB60302 Hypothetical protein Y105C5A.15 [Caenorhabditis elegans] ref|NP_502883.2| Y105C5A.15 [Caenorhabditis elegans] 0.0
blast CAE68072 Hypothetical protein CBG13701 [Caenorhabditis briggsae] 0.0
blast T31575 hypothetical protein Y105C5A.r - Caenorhabditis elegans 1.0E-177
Sequence
Target Sequence 
>C. ELEGANS:186828_AT
atttcagcagtttcacgcttctgtgttaatgcctcctttttaaaaattgtatttgtgctc
gaaactgaagcggcaaaaacttgtgaatgctataagctgctggatcagtttttttctttt
tacaggttttcttttcacagcctaagattaatattatcaaaaataaaatctacaaagggt
cgtgacaactcaaacgaagagtggcacggctgtggaactactgactgcactagcgctggc
tgtaagaaaaacgccgatggtagcaacgtttgctgttgccaaggatatctctgtaattcc
ggaatgagtttctcaaaaactgaattttcttcacttcttcttacagttctttcggtgatt
tacataaatgttttcagaaaactttttcagtattttcttcatatttcaattctgaaacaa
attgcaaatgaaaacatgttccgaccaatcatcgcgatcagccacgcctactccgtgcaa
aatatgatacttcagaatacagttaactcaacagtctcatccaagtcgaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCAGCAGTTTCACGCTTCTGTG 29 17 400 Antisense
TTCTGTGTTAATGCCTCCTTTTTAA 496 693 418 Antisense
ACAGGTTTTCTTTTCACAGCCTAAG 650 105 521 Antisense
GAGTGGCACGGCTGTGGAACTACTG 21 403 598 Antisense
TGGAACTACTGACTGCACTAGCGCT 564 547 612 Antisense
TGCTGTTGCCAAGGATATCTCTGTA 605 581 670 Antisense
TGAATTTTCTTCACTTCTTCTTACA 564 575 720 Antisense
TTCTTCTTACAGTTCTTTCGGTGAT 230 691 734 Antisense
ACATGTTCCGACCAATCATCGCGAT 143 107 833 Antisense
CCACGCCTACTCCGTGCAAAATATG 652 273 861 Antisense
TCAACAGTCTCATCCAAGTCGAACA 193 631 907 Antisense
Sequence Source Affymetrix Proprietary Database