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[186826_at]

Description Y111B2A.12 /REP_DB=WormBase Gene ID /WP=CE26629 /TR=Q9NEX3 /GB=CAC35841.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 57      4grp_total > 04      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 125.9
(-1.3)
P 		80.9
(-2)
A 		18.3
(-3)
A 		390.6
(3)
P 		372
B 144.1
(-0.5)
P 		83.9
(-3)
A 		87.9
(-2.8)
A 		229.1
(3)
P 		145
C 167.9
(-1.4)
P 		82.8
(-3)
A 		99.2
(-2.7)
A 		410.9
(3)
P 		328
avr 146
(-1.3) 		82.5
(-2.7) 		68.5
(-3) 		343.5
(3) 		275

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 194
1 2 3 4 5 6 range
A 192.2
(0.6)
M 		140.3
(-1)
P 		137.4
(-1.1)
P 		155.8
(-0.5)
A 		76.5
(-3)
A 		270.4
(3)
P 		194
B 114.7
(-2.3)
P 		174.5
(2.4)
A 		149.3
(0.4)
A 		117.9
(-2)
A 		105.3
(-3)
A 		182.3
(3)
P 		77
C 152.1
(-0.8)
P 		140.6
(-1.4)
P 		128.3
(-2)
A 		151.3
(-0.8)
A 		109.5
(-3)
A 		225.8
(3)
P 		116
avr 153
(-0.4) 		151.8
(-0.5) 		138.3
(-1.1) 		141.7
(-0.9) 		97.1
(-3) 		226.2
(3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 45.8
(1.7)
P 		17.6
(-1.5)
A 		4.8
(-3)
A 		57.2
(3)
P 		52
B 45.9
(2.4)
P 		20.7
(-2.9)
A 		20.4
(-3)
A 		48.8
(3)
P 		28
C 55.6
(1.2)
P 		23.8
(-3)
A 		34.6
(-1.6)
A 		69.3
(3)
P 		46
avr 49.1
(1.6) 		20.7
(-2.9) 		19.9
(-3) 		58.4
(3) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 35.4
(-1.3)
M 		49.9
(0.8)
P 		29.9
(-2)
P 		39.5
(-0.7)
A 		23.1
(-3)
A 		65.8
(3)
P 		43
B 39.9
(-1.6)
P 		58.1
(1.4)
A 		36.3
(-2.2)
A 		31.2
(-3)
A 		42.8
(-1.1)
A 		68
(3)
P 		37
C 56.4
(0.5)
P 		42.9
(-1.3)
P 		32.6
(-2.7)
A 		30.4
(-3)
A 		35.4
(-2.3)
A 		75.6
(3)
P 		45
avr 43.9
(-1.2) 		50.3
(-0.2) 		32.9
(-3) 		33.7
(-2.9) 		33.8
(-2.9) 		69.8
(3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6640
Sequence Type Exemplar sequence
Representative Public ID Y111B2A.12 NCBI
Target Description Y111B2A.12 /REP_DB=WormBase Gene ID /WP=CE26629 /TR=Q9NEX3 /GB=CAC35841.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067242(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067242 NCBI Caenorhabditis elegans Y111B2A.12 (Y111B2A.12) mRNA, complete cds. 11/11 A 
SNAP00000006159 ENSEMBL cdna:SNAP chromosome:CEL140:III:12609169:12612253:1 11/11 None
GENEFINDER00000006270 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12609169:12609834:1 11/11 None
Y111B2A.12 ENSEMBL cdna:known chromosome:CEL140:III:12609169:12617801:1 gene:Y111B2A.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12609164-12617797(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y111B2A.12
Entrez Gene 176680 Entrez gene
SwissProt Q9NEX3 EMBL-EBI
WormBase CE26629 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:261513_AT transducin family protein / WD-40 repeat family protein at
ATGENOME1:15352_AT transducin family protein / WD-40 repeat family protein at
CANINE:1584038_AT angio-associated, migratory cell protein cfa
CANINE_2:CFA.8616.1.A1_S_AT angio-associated, migratory cell protein cfa
CANINE_2:CFAAFFX.22541.1.S1_S_AT angio-associated, migratory cell protein cfa
DROSOPHILA_2:1634942_AT dm
DROSGENOME1:153148_AT dm
HG-U133_PLUS_2:201511_AT angio-associated, migratory cell protein hs
HG-U133A:201511_AT angio-associated, migratory cell protein hs
HG-FOCUS:201511_AT angio-associated, migratory cell protein hs
HG-U133A_2:201511_AT angio-associated, migratory cell protein hs
U133_X3P:201511_3P_AT angio-associated, migratory cell protein hs
HUGENEFL:M95627_AT angio-associated, migratory cell protein hs
U133_X3P:G4557228_3P_X_AT angio-associated, migratory cell protein hs
U133_X3P:G4557228_3P_AT angio-associated, migratory cell protein hs
HG-U95AV2:38434_AT angio-associated, migratory cell protein hs
MU11KSUBA:AA020104_S_AT angio-associated migratory protein mm
MG-U74AV2:98064_AT angio-associated migratory protein mm
MOE430A:1454754_A_AT angio-associated migratory protein mm
MOUSE430A_2:1454754_A_AT angio-associated migratory protein mm
MOUSE430_2:1454754_A_AT angio-associated migratory protein mm
MU19KSUBC:TC38666_AT Angio-associated migratory protein (Aamp), mRNA mm
MU19KSUBC:TC38666_G_AT Angio-associated migratory protein (Aamp), mRNA mm
MU19KSUBC:TC38667_AT Angio-associated migratory protein (Aamp), mRNA mm
RG-U34C:RC_AI103718_AT angio-associated migratory protein (predicted) rn
RAE230A:1398975_AT angio-associated migratory protein (predicted) rn
RAT230_2:1398975_AT angio-associated migratory protein (predicted) rn
RAE230B:1394853_AT angio-associated migratory protein (predicted) rn
RAT230_2:1394853_AT angio-associated migratory protein (predicted) rn
RAE230B:1380987_AT angio-associated migratory protein (predicted) rn
RAT230_2:1380987_AT angio-associated migratory protein (predicted) rn
RAE230B:1395346_AT angio-associated migratory protein (predicted) rn
RAT230_2:1395346_AT angio-associated migratory protein (predicted) rn
RG-U34C:RC_AI175236_AT Angio-associated migratory protein (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6096 glycolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4365 glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC35841 Hypothetical protein Y111B2A.12 [Caenorhabditis elegans] ref|NP_499643.1| Y111B2A.12 [Caenorhabditis elegans] 1.0E-111
blast CAC35841 Hypothetical protein Y111B2A.12 [Caenorhabditis elegans] ref|NP_499643.1| Y111B2A.12 [Caenorhabditis elegans] 4.0E-90
blast CAE72837 Hypothetical protein CBG20127 [Caenorhabditis briggsae] 2.0E-82
blast CAE72837 Hypothetical protein CBG20127 [Caenorhabditis briggsae] 3.0E-82
blast CAC35841 Hypothetical protein Y111B2A.12 [Caenorhabditis elegans] ref|NP_499643.1| Y111B2A.12 [Caenorhabditis elegans] 4.0E-62
blast CAE72837 Hypothetical protein CBG20127 [Caenorhabditis briggsae] 6.0E-56
blast CAF98205 unnamed protein product [Tetraodon nigroviridis] 6.0E-27
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0039
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.11
Sequence
Target Sequence 
>C. ELEGANS:186826_AT
gcaaagtacttcgaacgccgacgttcctgcagaaatcatcgatgattctctaatgtctct
ccaggcacacgctcaagactgtttcacagtggctctggcttcaaatcgttggctcgcgac
cggtggagaagacgatgtggctttccttttcgatcaaaaccaatccgaatccgagccagt
gcttaaggtggagcacaaggattctgtcactcaagtgatgttcaatcatagcgaaacttt
gctggctaccggcgatttgagcggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAAGTACTTCGAACGCCGACGTT 188 317 114 Antisense
GCCGACGTTCCTGCAGAAATCATCG 704 283 130 Antisense
TCGATGATTCTCTAATGTCTCTCCA 386 603 152 Antisense
CACACGCTCAAGACTGTTTCACAGT 459 195 179 Antisense
ACAGTGGCTCTGGCTTCAAATCGTT 554 105 199 Antisense
TTGGCTCGCGACCGGTGGAGAAGAC 432 707 222 Antisense
GAAGACGATGTGGCTTTCCTTTTCG 532 339 241 Antisense
ATCAAAACCAATCCGAATCCGAGCC 414 25 266 Antisense
TGGAGCACAAGGATTCTGTCACTCA 421 549 302 Antisense
TAGCGAAACTTTGCTGGCTACCGGC 36 653 342 Antisense
CTGGCTACCGGCGATTTGAGCGGGA 376 241 355 Antisense
Sequence Source Affymetrix Proprietary Database