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[186825_at]

Description C43E11.11 /REP_DB=WormBase Gene ID /WP=CE08689 /TR=P91151 /GB=AAB37625.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 94      6grp_total > 97      4grp_total > 26      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 272.9
(-2.2)
P
403.8
(1.6)
P
246.6
(-3)
P
451.7
(3)
P
205
B 262.9
(-3)
P
302.2
(-1.7)
P
360.8
(0.2)
P
447.3
(3)
P
184
C 397.5
(-0.6)
P
492.1
(2.7)
P
330.9
(-3)
P
500.8
(3)
P
170
avr 311.1
(-3)
399.4
(0.4)
312.8
(-2.9)
466.6
(3)
156

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 844
1 2 3 4 5 6 range
A 275.1
(-2.8)
P
254.7
(-3)
P
338.5
(-2.1)
P
481
(-0.7)
P
547.1
(0)
P
837.4
(3)
P
583
B 352.8
(-1.7)
P
195.5
(-3)
P
365.8
(-1.6)
P
472
(-0.7)
P
675.4
(0.9)
P
926.4
(3)
P
731
C 318.1
(-2.9)
P
301.8
(-3)
P
379.4
(-2.4)
P
465.7
(-1.7)
P
714.4
(0.4)
P
1039.7
(3)
P
738
avr 315.3
(-2.4)
250.7
(-3)
361.2
(-2)
472.9
(-1.1)
645.6
(0.5)
934.5
(3)
684
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 99.4
(3)
P
87.7
(1)
P
64.5
(-3)
P
66.1
(-2.7)
P
35
B 83.8
(-0.3)
P
74.6
(-3)
P
83.6
(-0.4)
P
95.3
(3)
P
21
C 131.6
(2)
P
141.5
(3)
P
115.3
(0.2)
P
84.4
(-3)
P
57
avr 104.9
(3)
101.3
(2.1)
87.8
(-1.5)
81.9
(-3)
23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 297
1 2 3 4 5 6 range
A 50.7
(-3)
P
90.6
(-1.4)
P
73.7
(-2.1)
P
122
(-0.2)
P
165.1
(1.5)
P
203.9
(3)
P
153
B 122.7
(-1.8)
P
65.1
(-3)
P
88.8
(-2.5)
P
125
(-1.7)
P
274.4
(1.5)
P
345.5
(3)
P
280
C 117.9
(-2.4)
P
92.1
(-3)
P
96.6
(-2.9)
P
93.6
(-3)
P
231.2
(0.3)
P
348
(3)
P
256
avr 97.1
(-2.6)
82.6
(-3)
86.4
(-2.9)
113.5
(-2.1)
223.6
(0.9)
299.1
(3)
217
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2442
Sequence Type Exemplar sequence
Representative Public ID C43E11.11 NCBI
Target Description C43E11.11 /REP_DB=WormBase Gene ID /WP=CE08689 /TR=P91151 /GB=AAB37625.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182043(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_182043 NCBI Caenorhabditis elegans C43E11.12 (C43E11.12) mRNA, complete cds. 11/11 None
GENEFINDER00000031029 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4249500:4253845:1 11/11 None
SNAP00000031015 ENSEMBL cdna:SNAP chromosome:CEL140:I:4253294:4253845:1 11/11 None
C43E11.12 ENSEMBL cdna:known chromosome:CEL140:I:4253243:4253866:1 gene:C43E11.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4249841-4253845(+) 97.63 100.0
Public Domain and Genome References
Gene Title
Ensembl C43E11.12
Entrez Gene 259372 Entrez gene
SwissProt Q8I7H4 EMBL-EBI
WormBase CE32608 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast A87754 protein C43E11.11 [imported] - Caenorhabditis elegans 0.0
blast AAN84839 Hypothetical protein C43E11.11 [Caenorhabditis elegans] ref|NP_491339.2| C43E11.11 [Caenorhabditis elegans] 0.0
blast AAN84840 Hypothetical protein C43E11.12 [Caenorhabditis elegans] ref|NP_871843.1| C43E11.12 [Caenorhabditis elegans] 1.0E-68
blast A87754 protein C43E11.11 [imported] - Caenorhabditis elegans 5.0E-62
blast AAN84840 Hypothetical protein C43E11.12 [Caenorhabditis elegans] ref|NP_871843.1| C43E11.12 [Caenorhabditis elegans] 5.0E-61
blast AAN84840 Hypothetical protein C43E11.12 [Caenorhabditis elegans] ref|NP_871843.1| C43E11.12 [Caenorhabditis elegans] 6.0E-58
blast A87754 protein C43E11.11 [imported] - Caenorhabditis elegans 6.0E-58
blast CAE66815 Hypothetical protein CBG12180 [Caenorhabditis briggsae] 6.0E-37
Sequence
Target Sequence
>C. ELEGANS:186825_AT
atgtcgcccatcaaacgagaaccagaagaagcatgcctgaagccaatgcgatttgaacaa
gaaatacccgaaagggtagatgagccggaagagatggaagttcaaccagaagaaatagag
gaagaagtagaagaagacgaaggtgatgatgatgaatgggaagatgtaacgatggtggtc
actgtcaatggaattctcgacgcggatcttgttagagatgccgtcgagagagatttgatc
aaattgcggtacgctgaaacggatgcaccagttttacagatcaacaactcactatacacg
gcatcctgggagcaagatctcggaacaaatatggttctgcagtcaaaaggaaaagagatg
gaagtgatttcgtgtacatcgaccatgatgactgcagaaaaagccctgttgacctcgtta
agcaccgaaggatctacactagccgccaatgcagagactgc


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
ATGTCGCCCATCAAACGAGAACCAG 131 49 1918 Antisense
GAAGCATGCCTGAAGCCAATGCGAT 412 339 1945 Antisense
GGTGGTCACTGTCAATGGAATTCTC 696 499 2091 Antisense
GAATTCTCGACGCGGATCTTGTTAG 179 323 2108 Antisense
GCGGTACGCTGAAACGGATGCACCA 471 293 2163 Antisense
TCAACAACTCACTATACACGGCATC 26 631 2198 Antisense
GGCATCCTGGGAGCAAGATCTCGGA 442 537 2217 Antisense
GTGATTTCGTGTACATCGACCATGA 530 483 2281 Antisense
CCTGTTGACCTCGTTAAGCACCGAA 279 265 2322 Antisense
AGCACCGAAGGATCTACACTAGCCG 298 75 2338 Antisense
CACTAGCCGCCAATGCAGAGACTGC 492 197 2354 Antisense
Sequence Source Affymetrix Proprietary Database