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[186824_at]

Description Y113G7A.10 /REP_DB=WormBase Gene ID /WP=CE23281 /TR=Q9U2Y6 /GB=CAB60482.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 20      6grp_cgc > 47      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 18.5
(-1.6)
A 		6.7
(-3)
A 		7.8
(-2.9)
A 		59.1
(3)
A 		52
B 11.3
(-1.9)
A 		14.8
(-0.3)
A 		21.9
(3)
A 		8.9
(-3)
A 		13
C 21.8
(0.6)
A 		34.5
(3)
A 		2.3
(-3)
A 		13.8
(-0.9)
A 		32
avr 17.2
(-0.7) 		18.7
(-0.1) 		10.7
(-3) 		27.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 30.3
(0.5)
A 		4.2
(-3)
A 		32.8
(0.9)
A 		4.3
(-3)
A 		12.2
(-1.9)
A 		48.5
(3)
A 		44
B 4.7
(-3)
A 		12.6
(-1.8)
A 		20.6
(-0.5)
A 		43
(3)
A 		18.8
(-0.8)
A 		36.6
(2)
A 		38
C 8.8
(-1.9)
A 		29.2
(3)
A 		4.1
(-3)
A 		6.8
(-2.4)
A 		18.2
(0.4)
A 		11.3
(-1.3)
A 		25
avr 14.6
(-3) 		15.3
(-2.8) 		19.2
(-1.4) 		18
(-1.8) 		16.4
(-2.4) 		32.1
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 6.7
(1.3)
A 		1.5
(-3)
A 		2
(-2.6)
A 		8.7
(3)
A 		7
B 3.6
(0.2)
A 		3.7
(0.4)
A 		5.1
(3)
A 		1.9
(-3)
A 		3
C 7.2
(1.2)
A 		9.9
(3)
A 		0.8
(-3)
A 		2.3
(-2)
A 		9
avr 5.8
(3) 		5
(1.5) 		2.6
(-3) 		4.3
(0.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.6
(-0.5)
A 		1.5
(-2.8)
A 		7.1
(0.4)
A 		1.1
(-3)
A 		3.7
(-1.5)
A 		11.8
(3)
A 		11
B 1.6
(-3)
A 		4.2
(-1.7)
A 		5
(-1.3)
A 		11.4
(1.9)
A 		7.7
(0)
A 		13.7
(3)
A 		12
C 3.3
(-1.3)
A 		8.9
(3)
A 		1
(-3)
A 		1.4
(-2.7)
A 		5.9
(0.7)
A 		3.8
(-0.9)
A 		8
avr 3.5
(-3) 		4.9
(-1.7) 		4.4
(-2.1) 		4.6
(-2) 		5.8
(-0.8) 		9.8
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186824_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12993
Sequence Type Exemplar sequence
Representative Public ID Y113G7A.10 NCBI
Target Description Y113G7A.10 /REP_DB=WormBase Gene ID /WP=CE23281 /TR=Q9U2Y6 /GB=CAB60482.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075470(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075470 NCBI Caenorhabditis elegans Y113G7A.10 (Y113G7A.10) mRNA, complete cds. 9/11 None
GENEFINDER00000016730 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20038986:20045356:-1 9/11 None
Y113G7A.10 ENSEMBL cdna:known chromosome:CEL140:V:20038986:20045356:-1 gene:Y113G7A.10 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20038985-20045356(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol spe-19
Ensembl Y113G7A.10
Entrez Gene 190958 Entrez gene
SwissProt Q9U2Y6 EMBL-EBI
WormBase CE34113 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60482 Hypothetical protein Y113G7A.10 [Caenorhabditis elegans] ref|NP_507871.2| Y113G7A.10 [Caenorhabditis elegans] 1.0E-163
blast CAB60482 Hypothetical protein Y113G7A.10 [Caenorhabditis elegans] ref|NP_507871.2| Y113G7A.10 [Caenorhabditis elegans] 1.0E-159
blast CAE67444 Hypothetical protein CBG12937 [Caenorhabditis briggsae] 3.0E-81
blast CAE67444 Hypothetical protein CBG12937 [Caenorhabditis briggsae] 5.0E-79
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507871.2 1 144-166
Y113G7A.10 1 144-166
GENEFINDER00000016730 1 144-166
Sequence
Target Sequence 
>C. ELEGANS:186824_AT
ggaacttcccaacggatgggcttgctgctgctccggccacaactgcaactggcacaaccc
ctcatttttccaatttttcgagagattcattctggacaattcagagcttttcaataggct
taaggccgtctgcaaatactcattttgcatagttttctgtgtttttatcacaattttgtg
gacaatcgtcgaggttttgctcacgaatttgtgtgaaaaacgacgaaaaacatgtctcat
gtccccacaagggcgcttttttttgttgaaaaaaaacacggaaatttatattccatcatc
tctgcaactgcagccaactcaaagctctttaaaatctcggtccggcaaaaatttgtcgga
aatgtcgctgcacccgggttccacgctgaaagtcgaaaaaactcaggaggatgacgtcac
tgaaccaaaaagatcggagctggaggtggcgagcactcaaagatcgagaattaataagga
tgatgactttgtcccaattcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTTCCCAACGGATGGGCTTGC 411 527 306 Antisense
TCCGGCCACAACTGCAACTGGCACA 355 593 337 Antisense
TAAGGCCGTCTGCAAATACTCATTT 281 637 426 Antisense
GTGGACAATCGTCGAGGTTTTGCTC 185 491 483 Antisense
GAAAAACATGTCTCATGTCCCCACA 551 355 530 Antisense
TTATATTCCATCATCTCTGCAACTG 183 679 591 Antisense
ACTGCAGCCAACTCAAAGCTCTTTA 149 99 612 Antisense
AGCTCTTTAAAATCTCGGTCCGGCA 576 61 628 Antisense
TTTGTCGGAAATGTCGCTGCACCCG 468 667 657 Antisense
GAGCTGGAGGTGGCGAGCACTCAAA 245 387 742 Antisense
GATGATGACTTTGTCCCAATTCCTG 439 409 784 Antisense
Sequence Source Affymetrix Proprietary Database