[Home] | [Total List]

[186823_at]

Description T23B12.10 /REP_DB=WormBase Gene ID /WP=CE14044 /TR=O17009 /GB=AAB69940.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 42      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 137.7
(-0.2)
A 		147.8
(0.8)
A 		170.2
(3)
A 		109.6
(-3)
A 		61
B 136.7
(-1.2)
A 		137.3
(-1.1)
A 		127.3
(-3)
A 		158.2
(3)
A 		31
C 106.4
(-3)
A 		270.8
(3)
A 		139.8
(-1.8)
A 		166.2
(-0.8)
A 		164
avr 126.9
(-3) 		185.3
(3) 		145.8
(-1.1) 		144.7
(-1.2) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 139.4
(3)
A 		111.4
(0.5)
A 		98.8
(-0.7)
A 		72.8
(-3)
A 		87.1
(-1.7)
A 		87.5
(-1.7)
A 		67
B 153.1
(2.4)
A 		131
(1.3)
A 		164.3
(3)
A 		46.2
(-3)
A 		96
(-0.5)
A 		126.4
(1.1)
A 		118
C 94.3
(-1.7)
A 		118.8
(0.8)
A 		140.7
(3)
A 		87.5
(-2.3)
A 		81
(-3)
A 		128.7
(1.8)
A 		60
avr 128.9
(2.5) 		120.4
(1.7) 		134.6
(3) 		68.8
(-3) 		88
(-1.2) 		114.2
(1.1) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 50.1
(3)
A 		32.1
(-0.2)
A 		44.5
(2)
A 		16
(-3)
A 		34
B 43.6
(3)
A 		33.9
(-1.1)
A 		29.5
(-3)
A 		33.7
(-1.2)
A 		14
C 35.2
(-2.1)
A 		77.9
(3)
A 		48.7
(-0.5)
A 		28
(-3)
A 		50
avr 43
(1.6) 		48
(3) 		40.9
(1.1) 		25.9
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 25.7
(-1)
A 		39.6
(3)
A 		21.5
(-2.1)
A 		18.5
(-3)
A 		26.3
(-0.8)
A 		21.3
(-2.2)
A 		21
B 53.3
(3)
A 		43.6
(1.6)
A 		39.9
(1)
A 		12.2
(-3)
A 		39
(0.9)
A 		47.1
(2.1)
A 		41
C 35
(1.1)
A 		36.2
(1.4)
A 		35.8
(1.3)
A 		17.6
(-3)
A 		26.2
(-1)
A 		43.1
(3)
A 		26
avr 38
(2.5) 		39.8
(3) 		32.4
(1.1) 		16.1
(-3) 		30.5
(0.6) 		37.2
(2.3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186823_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11337
Sequence Type Exemplar sequence
Representative Public ID T23B12.10 NCBI
Target Description T23B12.10 /REP_DB=WormBase Gene ID /WP=CE14044 /TR=O17009 /GB=AAB69940.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072784 NCBI Caenorhabditis elegans T23B12.10 (T23B12.10) mRNA, complete cds. 11/11 None
T23B12.10 ENSEMBL cdna:known chromosome:CEL140:V:8487143:8488452:-1 gene:T23B12.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042010 4/11 Cross Hyb Matching Probes None
GENEFINDER00000042021 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8487143-8488287(-) 56.46 81.18
Public Domain and Genome References
Gene Title
Ensembl T23B12.10
Entrez Gene 188780 Entrez gene
SwissProt O17009 EMBL-EBI
WormBase CE14044 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB69940 Hypothetical protein T23B12.10 [Caenorhabditis elegans] ref|NP_505185.1| T23B12.10 [Caenorhabditis elegans] 1.0E-151
blast AAK84578 Hypothetical protein T24H5.1 [Caenorhabditis elegans] ref|NP_505186.1| T24H5.1 [Caenorhabditis elegans] 2.0E-55
blast AAB69941 Hypothetical protein T23B12.9 [Caenorhabditis elegans] ref|NP_505184.1| T23B12.9 [Caenorhabditis elegans] 3.0E-54
Sequence
Target Sequence 
>C. ELEGANS:186823_AT
ttccgttctttgcagccataattcttgtaatttcttactctcctccgtatttacttgcat
tttcatcgaaaattcttgctaaattcagtaatattccggatttaaaccactcggtcacaa
agggatgtgcaacgacacaaaagtccaaagcaacagccagccaactccactcaaaagctc
caaagaaaaagaaacccgaagatcaggcaccagccgacaacacaaacgaacaacaacagc
agccagctgagaccaaccgcccatccgacgtaaccgatatcgagattctcgtgtccaccg
acgatgacagcagcgaagggaaagagccagctaagaaaataccaagtcgtgccggtgcta
caactccactcgtcaagacgaaggagccatcaaaagctgcagcgaataggagcgacagcg
gctccgcagatgagtcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGTTCTTTGCAGCCATAATTCT 663 697 398 Antisense
TTCTTGTAATTTCTTACTCTCCTCC 436 687 419 Antisense
TCTCCTCCGTATTTACTTGCATTTT 213 611 436 Antisense
AAACCACTCGGTCACAAAGGGATGT 643 121 501 Antisense
CAACTCCACTCAAAAGCTCCAAAGA 184 189 559 Antisense
GAAGATCAGGCACCAGCCGACAACA 607 337 595 Antisense
CCCATCCGACGTAACCGATATCGAG 83 257 657 Antisense
GTCCACCGACGATGACAGCAGCGAA 348 477 690 Antisense
GAAAATACCAAGTCGTGCCGGTGCT 605 353 732 Antisense
CTACAACTCCACTCGTCAAGACGAA 190 227 755 Antisense
GACAGCGGCTCCGCAGATGAGTCGA 690 367 811 Antisense
Sequence Source Affymetrix Proprietary Database