[Home] | [Total List]

[186822_at]

Description Y47G6A.16 /REP_DB=WormBase Gene ID /WP=CE24360 /TR=Q9N3T1 /GB=AAF60663.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 93.6
(3)
P 		59.8
(-0.1)
A 		37.6
(-2.1)
A 		28.2
(-3)
A 		65
B 51.7
(3)
P 		6.7
(-3)
A 		40
(1.4)
A 		35
(0.8)
P 		45
C 63.2
(1.3)
A 		27.9
(-3)
A 		48.4
(-0.5)
A 		76.8
(3)
A 		49
avr 69.5
(3) 		31.5
(-3) 		42
(-1.3) 		46.7
(-0.6) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 78.3
(3)
A 		52.6
(-0.8)
P 		41.4
(-2.5)
P 		37.7
(-3)
A 		41.8
(-2.4)
A 		40
(-2.7)
A 		41
B 65
(3)
P 		48.2
(-0.2)
A 		56.5
(1.4)
A 		35
(-2.7)
P 		36.2
(-2.4)
A 		33.2
(-3)
A 		32
C 47
(1.5)
P 		42.4
(1)
P 		61.9
(3)
A 		6.8
(-2.7)
A 		3.6
(-3)
A 		20.9
(-1.2)
M 		58
avr 63.4
(3) 		47.7
(0.4) 		53.3
(1.4) 		26.5
(-3) 		27.2
(-2.9) 		31.4
(-2.2) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 34.1
(3)
P 		13
(-1.2)
A 		9.8
(-1.9)
A 		4.1
(-3)
A 		30
B 16.5
(3)
P 		1.7
(-3)
A 		9.3
(0.1)
A 		7.5
(-0.6)
P 		15
C 20.9
(3)
A 		8
(-3)
A 		16.9
(1.1)
A 		12.9
(-0.7)
A 		13
avr 23.8
(3) 		7.6
(-3) 		12
(-1.4) 		8.2
(-2.8) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 14.4
(0.3)
A 		18.7
(3)
P 		9
(-3)
P 		9.6
(-2.6)
A 		12.6
(-0.8)
A 		9.7
(-2.6)
A 		10
B 22.6
(3)
P 		16.1
(0.1)
A 		13.7
(-1)
A 		9.3
(-3)
P 		14.7
(-0.6)
A 		12.4
(-1.6)
A 		13
C 17.4
(3)
P 		12.9
(1.3)
P 		15.8
(2.4)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		7
(-0.9)
M 		16
avr 18.1
(3) 		15.9
(1.8) 		12.8
(0.2) 		6.8
(-3) 		9.5
(-1.6) 		9.7
(-1.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186822_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.195
Sequence Type Exemplar sequence
Representative Public ID Y47G6A.16 NCBI
Target Description Y47G6A.16 /REP_DB=WormBase Gene ID /WP=CE24360 /TR=Q9N3T1 /GB=AAF60663.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058768(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058768 NCBI Caenorhabditis elegans Y47G6A.16 (Y47G6A.16) mRNA, complete cds. 11/11 None
SNAP00000033975 ENSEMBL cdna:SNAP chromosome:CEL140:I:3469556:3492215:-1 11/11 None
GENEFINDER00000034065 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3487827:3492215:-1 11/11 None
Y47G6A.16 ENSEMBL cdna:known chromosome:CEL140:I:3487863:3490389:-1 gene:Y47G6A.16 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3487862-3492164(-) 79.29 98.71
Public Domain and Genome References
Gene Title
Ensembl Y47G6A.16
Entrez Gene 189996 Entrez gene
SwissProt Q9N3T1 EMBL-EBI
WormBase CE36744 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491169 Y47G6A.16 [Caenorhabditis elegans] gb|AAF60663.2| Hypothetical protein Y47G6A.16 [Caenorhabditis elegans] 0.0
blast CAE68962 Hypothetical protein CBG14942 [Caenorhabditis briggsae] 0.0
blast CAE68962 Hypothetical protein CBG14942 [Caenorhabditis briggsae] 1.0E-161
blast NP_001021761 Y47G6A.15b [Caenorhabditis elegans] gb|AAU20833.1| Hypothetical protein Y47G6A.15b [Caenorhabditis elegans] 1.0E-112
blast AAC69023 Hypothetical protein T25G12.9 [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 5.6E-7
Pfam IPR002492 EMBL-EBI Transposase, Tc1/Tc3 9.8E-9
Pfam IPR001584 EMBL-EBI Integrase, catalytic domain 9.8E-8
Sequence
Target Sequence 
>C. ELEGANS:186822_AT
aatccgagtcgacaacaattcaaacgtccagaaggaagttaaaagagcaagagaagaagt
taaaaaggcgatgactgtaataaaacctcaaatgagcacagttgaaatacaggcagatct
tctcgagaaacgacattcgggaagtactaagagtcatagatcggaaacagtatctcataa
taaaattgaactttctacaatttcttcatcgtcttcctcgatatcttctccagcttcttc
ttcaaaatctcatagatcaaagactcttaaatccatatcgcgagattcaattctcgagga
gaggagattaagtcaaaaatcatttgatgagcaacccaacattcctgctccaaaatctga
cacaagtgattattatcagctgagggaaagtctgcaaatgacgcaagaaagactcatcga
aagtcaggaaaaactgattcaaatggaacgggactattcgtcgcttcatgagaagtttga
tagactgaaattaagattcgatagagatgaaaaaccaactggtgctgtcctagttctatc
agataagctggcggcaaaggatcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCGAGTCGACAACAATTCAAAC 151 167 1944 Antisense
GGCGATGACTGTAATAAAACCTCAA 165 541 2010 Antisense
GAAATACAGGCAGATCTTCTCGAGA 124 363 2047 Antisense
GATCTTCTCGAGAAACGACATTCGG 502 419 2059 Antisense
AAAGACTCTTAAATCCATATCGCGA 319 123 2202 Antisense
ATTCCTGCTCCAAAATCTGACACAA 584 7 2284 Antisense
TGGAACGGGACTATTCGTCGCTTCA 624 545 2387 Antisense
GACTATTCGTCGCTTCATGAGAAGT 692 371 2395 Antisense
AAAACCAACTGGTGCTGTCCTAGTT 385 131 2454 Antisense
GGTGCTGTCCTAGTTCTATCAGATA 381 501 2464 Antisense
GATAAGCTGGCGGCAAAGGATCGAG 290 423 2485 Antisense
Sequence Source Affymetrix Proprietary Database