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[186821_at] 7TM chemoreceptor, srw family

Description Y116F11B.5 /REP_DB=WormBase Gene ID /WP=CE26050 /TR=Q9GRV7 /GB=CAC14392.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 26      6grp_cgc > 95      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 7
(-2.1)
A 		7
(-2.1)
A 		1.7
(-3)
A 		35.4
(3)
A 		34
B 3.7
(-3)
A 		37.4
(3)
A 		17.2
(-0.6)
A 		7.8
(-2.3)
A 		34
C 3.3
(-3)
A 		5.1
(-2.7)
A 		15.1
(-1)
A 		38.3
(3)
A 		35
avr 4.7
(-3) 		16.5
(0.1) 		11.3
(-1.2) 		27.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 37.7
(3)
A 		17.2
(-0.5)
A 		2.7
(-3)
A 		23.3
(0.5)
A 		7.7
(-2.1)
A 		30.2
(1.7)
A 		35
B 15.5
(-0.2)
A 		1.6
(-3)
A 		31.7
(3)
A 		4.7
(-2.4)
A 		17
(0.1)
A 		8.2
(-1.7)
A 		30
C 3.5
(-2.8)
A 		15.6
(-1.1)
A 		2.3
(-2.9)
A 		44.5
(3)
A 		5.6
(-2.5)
A 		1.8
(-3)
A 		43
avr 18.9
(0.7) 		11.5
(-2.4) 		12.2
(-2.1) 		24.2
(3) 		10.1
(-3) 		13.4
(-1.6) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.5
(-0.4)
A 		1.5
(-1.6)
A 		0.4
(-3)
A 		5.2
(3)
A 		5
B 1.2
(-3)
A 		9.2
(3)
A 		4
(-0.9)
A 		1.7
(-2.6)
A 		8
C 1.1
(-3)
A 		1.5
(-2.6)
A 		5.3
(1.7)
A 		6.5
(3)
A 		5
avr 1.6
(-3) 		4.1
(2.2) 		3.2
(0.3) 		4.5
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7
(2.6)
A 		6.1
(1.9)
A 		0.6
(-3)
A 		5.9
(1.7)
A 		2.3
(-1.5)
A 		7.4
(3)
A 		7
B 5.4
(1.1)
A 		0.5
(-3)
A 		7.7
(3)
A 		1.2
(-2.4)
A 		6.9
(2.3)
A 		3.1
(-0.8)
A 		7
C 1.3
(-2.5)
A 		4.8
(0)
A 		0.6
(-3)
A 		9
(3)
A 		1.8
(-2.1)
A 		0.6
(-3)
A 		8
avr 4.6
(1) 		3.8
(-1) 		3
(-3) 		5.4
(3) 		3.7
(-1.3) 		3.7
(-1.3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186821_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13686
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.5 NCBI
Target Description Y116F11B.5 /REP_DB=WormBase Gene ID /WP=CE26050 /TR=Q9GRV7 /GB=CAC14392.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075441(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075441 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-38) (srw-38) mRNA, complete cds. 11/11 A 
Y116F11B.5 ENSEMBL cdna:known chromosome:CEL140:V:19834439:19837339:1 gene:Y116F11B.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019288 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19834438-19837339(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-38
Ensembl Y116F11B.5
Entrez Gene 191017 Entrez gene
SwissProt Q9GRV7 EMBL-EBI
WormBase CE26050 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14392 Hypothetical protein Y116F11B.5 [Caenorhabditis elegans] ref|NP_507842.1| Serpentine Receptor, class W family member (srw-38) [Caenorhabditis elegans] 0.0
blast CAA16268 Hypothetical protein F19B2.3 [Caenorhabditis elegans] ref|NP_507888.1| Serpentine Receptor, class W family member (srw-39) [Caenorhabditis elegans] 1.0E-125
blast CAB07191 Hypothetical protein F14F8.7 [Caenorhabditis elegans] ref|NP_507224.1| Serpentine Receptor, class W family member (srw-36) [Caenorhabditis elegans] 4.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR010726 EMBL-EBI Protein of unknown function DUF1300 1.1E-30
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507842.1 7 34-56,68-90,124-146,166-188,233-255,275-297,307-329
Y116F11B.5 7 34-56,68-90,124-146,166-188,233-255,275-297,307-329
Sequence
Target Sequence 
>C. ELEGANS:186821_AT
gggctgaaaatcctactgcccatcatcattctaatattacccctctggatagctgaaata
tctagtacaaacatagttgagacaggcatctgggtccctggtccaaattgtgatatattc
gctgaaaattatacagaaaaaatgtataccgttgagacatctattacatttggaatcgac
gatttctattggattgtctattacatatatgccgtgattttccagtttattccatcaatc
ttacttccaatctctacagttttgttgataattgagttgaagaaaaataaaaagacaaag
acctggaccagtaagagtcaggatagatctacgaagcttgtagtttatatgacaatttcc
tttattatggccaatgctccttatagtttgatatatagtttgtcatttatgctgtcagcc
tatgcaagaatgataatatcccaattatcagtaattgcatatcttttaacaactctaaac
gtagccactcattggctgttatgttatttcatgtctacacaataccggaatactgccaga
ga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCTGAAAATCCTACTGCCCATCA 175 493 499 Antisense
CTACTGCCCATCATCATTCTAATAT 89 227 511 Antisense
TCATCATTCTAATATTACCCCTCTG 219 619 521 Antisense
GACAATTTCCTTTATTATGGCCAAT 76 365 849 Antisense
TTATGGCCAATGCTCCTTATAGTTT 227 669 863 Antisense
GTTTGTCATTTATGCTGTCAGCCTA 68 453 896 Antisense
ATGCTGTCAGCCTATGCAAGAATGA 489 31 907 Antisense
ACAACTCTAAACGTAGCCACTCATT 149 113 967 Antisense
GCCACTCATTGGCTGTTATGTTATT 238 279 982 Antisense
GTTATTTCATGTCTACACAATACCG 290 447 1001 Antisense
CACAATACCGGAATACTGCCAGAGA 657 193 1016 Antisense
Sequence Source Affymetrix Proprietary Database