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[186820_at]

Description E02C12.12 /REP_DB=WormBase Gene ID /WP=CE04321 /TR=Q19036 /GB=AAA83469.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 47      4grp_total > 43      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 19.9
(-0.9)
A 		27.2
(0.2)
A 		5.4
(-3)
A 		46.3
(3)
A 		41
B 12.6
(-1.6)
A 		38.9
(2.7)
A 		40.6
(3)
A 		4.2
(-3)
A 		36
C 35.2
(3)
A 		17.8
(-3)
A 		23.6
(-1)
A 		20.7
(-2)
A 		17
avr 22.6
(-3) 		28
(3) 		23.2
(-2.3) 		23.7
(-1.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 35.7
(3)
A 		25.9
(0.7)
A 		31.5
(2)
A 		10
(-3)
A 		19.2
(-0.9)
A 		12.3
(-2.5)
A 		26
B 9.5
(-0.8)
A 		21.4
(3)
A 		2.8
(-3)
A 		15.2
(1)
A 		16.2
(1.3)
A 		16.4
(1.4)
A 		19
C 29
(0.7)
A 		6.4
(-3)
A 		27.7
(0.4)
A 		34.5
(1.5)
A 		13.7
(-1.8)
A 		43.5
(3)
A 		37
avr 24.7
(3) 		17.9
(-1.9) 		20.7
(0.1) 		19.9
(-0.5) 		16.4
(-3) 		24.1
(2.6) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 7.2
(3)
A 		5.9
(1.7)
A 		1.4
(-3)
A 		6.8
(2.6)
A 		6
B 4
(-0.9)
A 		9.6
(3)
A 		9.4
(2.9)
A 		0.9
(-3)
A 		9
C 11.6
(3)
A 		5.1
(-1.8)
A 		8.2
(0.5)
A 		3.5
(-3)
A 		8
avr 7.6
(3) 		6.9
(1.9) 		6.3
(1) 		3.7
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.6
(0.7)
A 		9.2
(3)
A 		6.9
(0.9)
A 		2.5
(-3)
A 		5.8
(-0)
A 		3
(-2.6)
A 		7
B 3.3
(-0.6)
A 		7.1
(3)
A 		0.7
(-3)
A 		4
(0.1)
A 		6.6
(2.5)
A 		6.1
(2.1)
A 		6
C 10.8
(1.2)
A 		2
(-3)
A 		7
(-0.6)
A 		6.9
(-0.7)
A 		4.4
(-1.9)
A 		14.6
(3)
A 		13
avr 6.9
(1.2) 		6.1
(-0.2) 		4.9
(-2.3) 		4.5
(-3) 		5.6
(-1.1) 		7.9
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186820_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12019
Sequence Type Exemplar sequence
Representative Public ID E02C12.12 NCBI
Target Description E02C12.12 /REP_DB=WormBase Gene ID /WP=CE04321 /TR=Q19036 /GB=AAA83469.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073031(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073031 NCBI Caenorhabditis elegans E02C12.12 (E02C12.12) mRNA, complete cds. 11/11 None
SNAP00000032012 ENSEMBL cdna:SNAP chromosome:CEL140:V:9382652:9383484:-1 11/11 None
GENEFINDER00000032019 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9381864:9383484:-1 10/11 None
E02C12.12 ENSEMBL cdna:known chromosome:CEL140:V:9382652:9383484:-1 gene:E02C12.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9382651-9383484(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl E02C12.12
Entrez Gene 183991 Entrez gene
SwissProt Q19036 EMBL-EBI
WormBase CE04321 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83469 Hypothetical protein E02C12.12 [Caenorhabditis elegans] ref|NP_505432.1| E02C12.12 [Caenorhabditis elegans] 1.0E-123
blast AAA83469 Hypothetical protein E02C12.12 [Caenorhabditis elegans] ref|NP_505432.1| E02C12.12 [Caenorhabditis elegans] 1.0E-114
blast AAA83467 Hypothetical protein E02C12.10 [Caenorhabditis elegans] ref|NP_505430.1| E02C12.10 [Caenorhabditis elegans] 2.0E-83
blast AAF39843 Hypothetical protein F56A4.5 [Caenorhabditis elegans] ref|NP_503669.1| F56A4.5 [Caenorhabditis elegans] 2.0E-82
Sequence
Target Sequence 
>C. ELEGANS:186820_AT
agaagcaatgcaactttcttttggaacgtatgcaacgtttggagataatatgaaagcgac
aaatattagtgacttgaaaggatttcaatcaataatcgctttgattgaacccgattggat
tgacgttgaaaagggaaaagatcttccgaagaagtttgcagtgaagatatccacacaatt
ggctcttgctgttctttcaaaaatcatgaaactcgggggtgagaatggattcagtgaaga
aaagctgaatgaacttgggaaacttattagagatggacataatcgtgaagttgctactta
taaacttcttgagaaaatgaatcatccggacattccatatacaaaggtctatggactcaa
aggatattctgatgcaaatgatttgaagggtttcatgattatggaatttattccaaatgt
tcgttcaattccaatgtatgaagcaattctagcagatgacctcatttctcttgttcgtgg
aattgccacttttgcagcacttggggaaactttatcagaagaagaaaaagcttttgccgg
aggacctgaatacctagaatcgatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCAATGCAACTTTCTTTTGGA 675 73 75 Antisense
GATTGAACCCGATTGGATTGACGTT 527 433 177 Antisense
TATCCACACAATTGGCTCTTGCTGT 140 657 242 Antisense
GGCTCTTGCTGTTCTTTCAAAAATC 461 539 255 Antisense
TTGCTACTTATAAACTTCTTGAGAA 385 699 365 Antisense
GAATCATCCGGACATTCCATATACA 470 327 393 Antisense
GAAGCAATTCTAGCAGATGACCTCA 311 341 514 Antisense
GCAGATGACCTCATTTCTCTTGTTC 142 313 526 Antisense
AGCACTTGGGGAAACTTTATCAGAA 312 75 570 Antisense
GAAAAAGCTTTTGCCGGAGGACCTG 259 355 598 Antisense
GGACCTGAATACCTAGAATCGATGT 600 523 616 Antisense
Sequence Source Affymetrix Proprietary Database