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[186818_at]

Description Y18D10A.18 /REP_DB=WormBase Gene ID /WP=CE21414 /TR=Q9XW07 /GB=CAA22327.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 21      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 10.5
(3)
A 		4.8
(-3)
A 		7.5
(-0.2)
A 		4.8
(-3)
A 		6
B 11.5
(2.9)
A 		11.7
(3)
A 		2.8
(-3)
A 		6
(-0.8)
A 		9
C 8.7
(-1.4)
A 		3
(-2.9)
A 		2.7
(-3)
A 		25.8
(3)
A 		23
avr 10.2
(1.5) 		6.5
(-1.3) 		4.3
(-3) 		12.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.9
(-2.5)
A 		5.6
(-2)
A 		4.3
(-3)
A 		5.2
(-2.3)
A 		10.1
(1.5)
A 		12.1
(3)
A 		8
B 6.3
(-3)
A 		8.7
(-1.9)
A 		10.2
(-1.2)
A 		6.7
(-2.8)
A 		9.3
(-1.6)
A 		19.5
(3)
A 		13
C 2.4
(-3)
A 		3.8
(-1.8)
A 		3.6
(-2)
A 		5.6
(-0.3)
A 		9.4
(2.8)
A 		9.6
(3)
A 		7
avr 4.5
(-3) 		6
(-2) 		6
(-2) 		5.8
(-2.2) 		9.6
(0.3) 		13.7
(3) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.8
(3)
A 		1
(-2.4)
A 		2
(-0.5)
A 		0.7
(-3)
A 		3
B 3.7
(3)
A 		2.9
(1.5)
A 		0.6
(-3)
A 		1.3
(-1.6)
A 		3
C 2.9
(0.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		4.3
(3)
A 		3
avr 3.5
(3) 		1.6
(-2) 		1.2
(-3) 		2.1
(-0.7) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.9
(-3)
A 		2
(0.1)
A 		0.9
(-3)
A 		1.3
(-1.9)
A 		3
(3)
A 		3
(3)
A 		2
B 2.2
(-2.6)
A 		2.9
(-1.8)
A 		2.5
(-2.2)
A 		1.8
(-3)
A 		3.8
(-0.8)
A 		7.3
(3)
A 		6
C 0.9
(-3)
A 		1.1
(-2.5)
A 		0.9
(-3)
A 		1.1
(-2.5)
A 		3
(2.5)
A 		3.2
(3)
A 		2
avr 1.3
(-3) 		2
(-1.7) 		1.4
(-2.8) 		1.4
(-2.8) 		3.3
(0.8) 		4.5
(3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186818_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2433
Sequence Type Exemplar sequence
Representative Public ID Y18D10A.18 NCBI
Target Description Y18D10A.18 /REP_DB=WormBase Gene ID /WP=CE21414 /TR=Q9XW07 /GB=CAA22327.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060854(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060854 NCBI Caenorhabditis elegans Y18D10A.18 (Y18D10A.18) mRNA, complete cds. 11/11 None
SNAP00000000427 ENSEMBL cdna:SNAP chromosome:CEL140:I:12914583:12915875:-1 10/11 None
Y18D10A.18 ENSEMBL cdna:known chromosome:CEL140:I:12914583:12915875:-1 gene:Y18D10A.18 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000445 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12914513-12915806(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18D10A.18
Entrez Gene 189476 Entrez gene
SwissProt Q9XW07 EMBL-EBI
WormBase CE21414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22327 Hypothetical protein Y18D10A.18 [Caenorhabditis elegans] ref|NP_493255.1| Y18D10A.18 [Caenorhabditis elegans] 0.0
blast CAA22327 Hypothetical protein Y18D10A.18 [Caenorhabditis elegans] ref|NP_493255.1| Y18D10A.18 [Caenorhabditis elegans] 1.0E-163
blast CAB54338 Hypothetical protein Y113G7B.3 [Caenorhabditis elegans] ref|NP_507893.1| Y113G7B.3 [Caenorhabditis elegans] 6.0E-16
blast CAB60569 Hypothetical protein Y37H2A.4 [Caenorhabditis elegans] ref|NP_507536.1| Y37H2A.4 [Caenorhabditis elegans] 1.0E-14
blast CAB54328 Hypothetical protein Y113G7B.6 [Caenorhabditis elegans] ref|NP_507898.1| Y113G7B.6 [Caenorhabditis elegans] 6.0E-12
blast T27120 hypothetical protein Y53C10A.8 - Caenorhabditis elegans 1.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.4E-11
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.9E-12
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 8.0E-8
Sequence
Target Sequence 
>C. ELEGANS:186818_AT
gaacttctccaaatactgctgcaaactaatcgaaagaattctaaaacaatcggcctatcc
aaatttaaaaaagattcatttgttcggtctcaactctcgtcaaactccatcgattctccg
tcatttcaagccaggaaaattggaatttctctggtcagattcatttaatgcagaaacaat
gaaggaaatgtataaattggatcaatggaaaatggcaaaatcgcaatttgaaaatatcaa
aatccgtgatcaatgtgctcctggaataccgtcgacgtttggctatttatggaattatca
tcgctatgccaaattggttactgttggaaaggctgttgaaatcaaaaattgcctcatgaa
gtccacaaatttcaaaaaatgggaattctgcatgggtatgagtttggacgctgcgagagt
tttcgatccgaatgcctctggattcgaaatttcccgagatggaggagttaagggaactat
tcgctgtctcttcaaagggcatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACTTCTCCAAATACTGCTGCAAA 211 351 432 Antisense
ATTCATTTGTTCGGTCTCAACTCTC 565 11 505 Antisense
AACTCTCGTCAAACTCCATCGATTC 477 139 523 Antisense
GTGATCAATGTGCTCCTGGAATACC 71 485 677 Antisense
ATACCGTCGACGTTTGGCTATTTAT 663 21 697 Antisense
AAATTGCCTCATGAAGTCCACAAAT 634 115 777 Antisense
GGGTATGAGTTTGGACGCTGCGAGA 94 497 825 Antisense
TTTCGATCCGAATGCCTCTGGATTC 432 671 852 Antisense
GCCTCTGGATTCGAAATTTCCCGAG 343 283 865 Antisense
TTAAGGGAACTATTCGCTGTCTCTT 509 679 899 Antisense
TTCGCTGTCTCTTCAAAGGGCATAG 188 697 911 Antisense
Sequence Source Affymetrix Proprietary Database