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[186817_at]

Description Y116F11B.2 /REP_DB=WormBase Gene ID /WP=CE26047 /TR=Q9GNI8 /GB=CAC14395.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 40      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 4.7
(-1.2)
A 		3.3
(-3)
A 		6.9
(1.6)
A 		8
(3)
A 		5
B 2.6
(-3)
A 		5.4
(3)
A 		3.6
(-0.9)
A 		4.9
(1.9)
A 		3
C 5.2
(-3)
A 		8.9
(-1.6)
A 		20.7
(3)
A 		9.3
(-1.4)
A 		16
avr 4.2
(-3) 		5.9
(-1.4) 		10.4
(3) 		7.4
(0.1) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.4
(-1.7)
A 		3.9
(-2.4)
A 		3.2
(-2.8)
A 		2.7
(-3)
A 		7.4
(-0.7)
A 		15.1
(3)
A 		12
B 3.9
(1.6)
A 		3.4
(0.1)
A 		2.3
(-3)
A 		3.6
(0.7)
A 		3.8
(1.3)
A 		4.4
(3)
A 		2
C 4.1
(3)
A 		3.2
(0.8)
A 		3.1
(0.5)
A 		3
(0.3)
A 		3.2
(0.8)
A 		1.7
(-3)
A 		2
avr 4.5
(-0.7) 		3.5
(-2.1) 		2.9
(-3) 		3.1
(-2.7) 		4.8
(-0.3) 		7.1
(3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.7
(2.5)
A 		0.7
(-3)
A 		1.8
(3)
A 		1.2
(-0.3)
A 		1
B 0.8
(-3)
A 		1.3
(3)
A 		0.8
(-3)
A 		1
(-0.6)
A 		1
C 1.7
(-2.9)
A 		2.6
(-1.9)
A 		7.2
(3)
A 		1.6
(-3)
A 		6
avr 1.4
(-2.7) 		1.5
(-2.4) 		3.3
(3) 		1.3
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1
(-2.4)
A 		1.4
(-1.6)
A 		0.7
(-3)
A 		0.7
(-3)
A 		2.2
(0)
A 		3.7
(3)
A 		3
B 1.4
(1.8)
A 		1.1
(0)
A 		0.6
(-3)
A 		1
(-0.6)
A 		1.6
(3)
A 		1.6
(3)
A 		1
C 1.5
(3)
A 		1
(-0.3)
A 		0.8
(-1.7)
A 		0.6
(-3)
A 		1
(-0.3)
A 		0.6
(-3)
A 		1
avr 1.3
(-0.2) 		1.2
(-0.7) 		0.7
(-3) 		0.8
(-2.5) 		1.6
(1.2) 		2
(3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13367
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.2 NCBI
Target Description Y116F11B.2 /REP_DB=WormBase Gene ID /WP=CE26047 /TR=Q9GNI8 /GB=CAC14395.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075438(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075438 NCBI Caenorhabditis elegans Y116F11B.2 (Y116F11B.2) mRNA, complete cds. 11/11 None
Y116F11B.2 ENSEMBL cdna:known chromosome:CEL140:V:19795996:19799130:-1 gene:Y116F11B.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031776 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19795995-19799130(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y116F11B.2
Entrez Gene 191015 Entrez gene
SwissProt Q9GNI8 EMBL-EBI
WormBase CE26047 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC14395 Hypothetical protein Y116F11B.2 [Caenorhabditis elegans] emb|CAC15860.1| Hypothetical protein Y116F11B.2 [Caenorhabditis elegans] ref|NP_507839.1| Y116F11B.2 [Caenorhabditis elegans] 0.0
blast AAC68787 Hypothetical protein F54D10.9 [Caenorhabditis elegans] ref|NP_494664.1| F54D10.9 [Caenorhabditis elegans] 1.0E-50
blast AAK68160 Hypothetical protein C04G6.2 [Caenorhabditis elegans] ref|NP_494941.1| C04G6.2 [Caenorhabditis elegans] 4.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 6.2E-45
Pfam IPR005044 EMBL-EBI Caenorhabditis protein of unknown function DUF282 2.2E-16
Sequence
Target Sequence 
>C. ELEGANS:186817_AT
gtgctccaacaatttacgatccgaattgctatgggccaggtttcccagatgcaaatgact
ggtgtgcgactgaggctgcggtttcacctcaatactctttagatcctttttacatcgacc
aatgcgtcgcagaatggacatgcccaacggggacatatgcggtgtacgagtccggtggta
cggtgataacggatgaagttagtggagcattttgtcaagaaactggaggcaaccagggat
cgtggtatgcaacatattttggtaacccaatctattttgacactttcaaatgcaaaaatc
ttccggctctcacttgcactttctgtcttccaatggtgtacaacccagattgctatggcg
tggataatccgagcaacaccgactggtgttacactgaagccgaggtcacagtcaactatt
atagagatgttgatacttgcattgcggcgttcacatgcccatacggaactgacgcgattt
ttgatctcggtggtactgatcaaaatgcgggaagtcaggttgtatcgacgctttgtgatg
aattcgcagccactccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTCCAACAATTTACGATCCGAA 418 479 539 Antisense
GCTATGGGCCAGGTTTCCCAGATGC 99 303 566 Antisense
ATGACTGGTGTGCGACTGAGGCTGC 89 45 593 Antisense
TTCACCTCAATACTCTTTAGATCCT 466 687 621 Antisense
GATCCTTTTTACATCGACCAATGCG 152 417 640 Antisense
AATGCAAAAATCTTCCGGCTCTCAC 623 165 827 Antisense
TTGCACTTTCTGTCTTCCAATGGTG 512 701 852 Antisense
GAAGCCGAGGTCACAGTCAACTATT 94 343 934 Antisense
GATACTTGCATTGCGGCGTTCACAT 670 423 970 Antisense
CATGCCCATACGGAACTGACGCGAT 633 209 992 Antisense
TTGTGATGAATTCGCAGCCACTCCG 132 709 1071 Antisense
Sequence Source Affymetrix Proprietary Database