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[186815_s_at]

Description E02C12.11 /REP_DB=WormBase Gene ID /WP=CE04320 /TR=Q19035 /GB=AAA83468.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 45.9
(2.6)
P 		3
(-3)
A 		12.1
(-1.8)
A 		48.6
(3)
A 		46
B 25
(0.9)
A 		3.6
(-3)
A 		23
(0.5)
A 		36.5
(3)
P 		33
C 37.2
(-1.1)
P 		5.8
(-2.7)
A 		1.1
(-3)
A 		113.5
(3)
P 		112
avr 36
(0.1) 		4.1
(-3) 		12.1
(-2.2) 		66.2
(3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 21.8
(1)
A 		2.1
(-2.9)
A 		31.9
(3)
P 		1.8
(-3)
A 		10.2
(-1.3)
A 		8.7
(-1.6)
A 		30
B 18.2
(0.2)
A 		12.4
(-1)
A 		32.1
(3)
A 		2.4
(-3)
A 		3
(-2.9)
A 		11.6
(-1.1)
A 		30
C 12.1
(-1.6)
A 		34.3
(2)
A 		25.5
(0.6)
A 		40.1
(3)
A 		3.9
(-3)
A 		10.4
(-1.9)
A 		36
avr 17.4
(-0.1) 		16.3
(-0.4) 		29.8
(3) 		14.8
(-0.7) 		5.7
(-3) 		10.2
(-1.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.7
(3)
P 		0.6
(-3)
A 		3.2
(-2)
A 		7.1
(-0.6)
A 		16
B 8
(3)
A 		0.9
(-3)
A 		5.3
(0.7)
A 		7.8
(2.8)
P 		7
C 12.3
(0.8)
P 		1.7
(-2.6)
A 		0.4
(-3)
A 		19.1
(3)
P 		19
avr 12.3
(3) 		1.1
(-3) 		3
(-2) 		11.3
(2.5) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 4
(0.2)
A 		0.8
(-2.7)
A 		7
(3)
P 		0.5
(-3)
A 		3.1
(-0.6)
A 		2.1
(-1.5)
A 		7
B 6.3
(1.8)
A 		4.1
(-0.1)
A 		7.8
(3)
A 		0.6
(-3)
A 		1.2
(-2.5)
A 		4.3
(0.1)
A 		7
C 4.5
(-0.9)
A 		10.5
(3)
A 		6.5
(0.4)
A 		8.1
(1.4)
A 		1.3
(-3)
A 		3.5
(-1.6)
A 		9
avr 4.9
(0.5) 		5.1
(0.7) 		7.1
(3) 		3.1
(-1.6) 		1.9
(-3) 		3.3
(-1.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186815_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11899
Sequence Type Exemplar sequence
Representative Public ID E02C12.11 NCBI
Target Description E02C12.11 /REP_DB=WormBase Gene ID /WP=CE04320 /TR=Q19035 /GB=AAA83468.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073029(11), NM_073030(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073029 NCBI Caenorhabditis elegans E02C12.10 (E02C12.10) mRNA, complete cds. 11/11 A 
NM_073030 NCBI Caenorhabditis elegans E02C12.11 (E02C12.11) mRNA, complete cds. 11/11 None
SNAP00000032010 ENSEMBL cdna:SNAP chromosome:CEL140:V:9379396:9380988:-1 11/11 None
SNAP00000032011 ENSEMBL cdna:SNAP chromosome:CEL140:V:9382019:9382492:-1 11/11 None
GENEFINDER00000032014 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9376490:9380988:-1 11/11 None
E02C12.10 ENSEMBL cdna:known chromosome:CEL140:V:9377683:9380988:-1 gene:E02C12.10 11/11 A 
E02C12.11 ENSEMBL cdna:known chromosome:CEL140:V:9382019:9382492:-1 gene:E02C12.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000032019 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9382018-9382492(-) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl E02C12.10
E02C12.11
Entrez Gene 183989 Entrez gene
183990 Entrez gene
SwissProt Q19034 EMBL-EBI
Q19035 EMBL-EBI
WormBase CE04319 Wormbase
CE04320 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83467 Hypothetical protein E02C12.10 [Caenorhabditis elegans] ref|NP_505430.1| E02C12.10 [Caenorhabditis elegans] 0.0
blast AAA83466 Hypothetical protein E02C12.9 [Caenorhabditis elegans] ref|NP_505429.1| E02C12.9 [Caenorhabditis elegans] 1.0E-148
blast AAF39843 Hypothetical protein F56A4.5 [Caenorhabditis elegans] ref|NP_503669.1| F56A4.5 [Caenorhabditis elegans] 1.0E-146
blast NP_503696 Y45G12C.4 [Caenorhabditis elegans] gb|AAF60581.1| Hypothetical protein Y45G12C.4 [Caenorhabditis elegans] 1.0E-146
Protein Domains
Database ID Description E-Value
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.8E-7
Pfam IPR004119 EMBL-EBI Protein of unknown function DUF227 1.8E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000032014 1 909-926
Sequence
Target Sequence 
>C. ELEGANS:186815_S_AT
gttacattgcttggatgagtttggaaatttgaaattgaaagcaataattgattggcaagg
agtatcaacattacctcctggattagatctttcaagacttttgatgggatgtctcagtgc
acatgaaagacgagagagaggtctggaaatgttgaaattataccatgaaacattcaatca
agttcttggaaaagaactgttttcattccaagaattacaagactcatataatctttacta
tccaatgatggctat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTACATTGCTTGGATGAGTTTGGA 369 445 15 Antisense
GAGTATCAACATTACCTCCTGGATT 508 399 74 Antisense
TACCTCCTGGATTAGATCTTTCAAG 75 651 86 Antisense
GACTTTTGATGGGATGTCTCAGTGC 192 371 110 Antisense
GGGATGTCTCAGTGCACATGAAAGA 52 497 120 Antisense
GACGAGAGAGAGGTCTGGAAATGTT 397 379 143 Antisense
GAAACATTCAATCAAGTTCTTGGAA 582 355 181 Antisense
AAAGAACTGTTTTCATTCCAAGAAT 444 123 205 Antisense
CATTCCAAGAATTACAAGACTCATA 14 211 218 Antisense
AAGACTCATATAATCTTTACTATCC 326 153 233 Antisense
ATCTTTACTATCCAATGATGGCTAT 564 31 245 Antisense
Sequence Source Affymetrix Proprietary Database