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[186814_at]

Description R07B1.6 /REP_DB=WormBase Gene ID /WP=CE01632 /TR=SW:Q09420 /GB=CAA88543.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 41      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 10.3
(-3)
A 		80.6
(3)
P 		65.4
(1.7)
P 		52.6
(0.6)
A 		70
B 16.1
(-3)
A 		60.7
(1.1)
P 		81
(3)
P 		21.4
(-2.5)
A 		65
C 20.7
(-3)
P 		72
(3)
P 		68.9
(2.6)
P 		38.6
(-0.9)
A 		51
avr 15.7
(-3) 		71.1
(2.9) 		71.8
(3) 		37.5
(-0.7) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 73.5
(3)
P 		72.8
(2.9)
P 		31.8
(-0.5)
P 		58.9
(1.8)
P 		41.1
(0.3)
P 		1.2
(-3)
A 		72
B 22.2
(-1.1)
A 		64.5
(3)
P 		50.8
(1.7)
P 		40.5
(0.7)
P 		36.8
(0.3)
P 		2.4
(-3)
A 		62
C 27.7
(-2.8)
A 		93.6
(3)
P 		54
(-0.5)
P 		25.6
(-3)
A 		30.8
(-2.5)
P 		28
(-2.8)
A 		68
avr 41.1
(-0.2) 		77
(3) 		45.5
(0.2) 		41.7
(-0.2) 		36.2
(-0.7) 		10.5
(-3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.8
(-3)
A 		17.5
(3)
P 		17.1
(2.8)
P 		7.7
(-1.3)
A 		14
B 5.2
(-2.7)
A 		15
(1.4)
P 		18.8
(3)
P 		4.6
(-3)
A 		14
C 6.9
(-2.9)
P 		20.7
(1.9)
P 		24
(3)
P 		6.5
(-3)
A 		18
avr 5.3
(-3) 		17.7
(2.1) 		20
(3) 		6.3
(-2.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 13.6
(0.1)
P 		25.9
(3)
P 		6.9
(-1.5)
P 		15
(0.4)
P 		12.4
(-0.2)
P 		0.3
(-3)
A 		26
B 7.7
(-1)
A 		21.5
(3)
P 		12.3
(0.3)
P 		10.7
(-0.1)
P 		14.9
(1.1)
P 		0.9
(-3)
A 		21
C 10.3
(-1.7)
A 		28.6
(3)
P 		13.7
(-0.8)
P 		5.1
(-3)
A 		10
(-1.7)
P 		9.4
(-1.9)
A 		24
avr 10.5
(-1.1) 		25.3
(3) 		11
(-0.9) 		10.3
(-1.1) 		12.4
(-0.6) 		3.5
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15972
Sequence Type Exemplar sequence
Representative Public ID R07B1.6 NCBI
Target Description R07B1.6 /REP_DB=WormBase Gene ID /WP=CE01632 /TR=SW:Q09420 /GB=CAA88543.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077253(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077253 NCBI Caenorhabditis elegans R07B1.6 (R07B1.6) mRNA, complete cds. 11/11 None
SNAP00000020692 ENSEMBL cdna:SNAP chromosome:CEL140:X:9866598:9867852:1 11/11 None
GENEFINDER00000020710 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:9866598:9868413:1 11/11 None
R07B1.6 ENSEMBL cdna:known chromosome:CEL140:X:9866598:9867852:1 gene:R07B1.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9866597-9867852(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07B1.6
Entrez Gene 187647 Entrez gene
SwissProt Q09420 EMBL-EBI
WormBase CE01632 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88543 Hypothetical protein R07B1.6 [Caenorhabditis elegans] ref|NP_509654.1| R07B1.6 [Caenorhabditis elegans] sp|Q09420|YRN6_CAEEL Hypothetical protein R07B1.6 in chromosome X 2.0E-57
blast CAA88543 Hypothetical protein R07B1.6 [Caenorhabditis elegans] ref|NP_509654.1| R07B1.6 [Caenorhabditis elegans] sp|Q09420|YRN6_CAEEL Hypothetical protein R07B1.6 in chromosome X 1.0E-48
blast CAA88542 Hypothetical protein R07B1.5 [Caenorhabditis elegans] ref|NP_509653.1| R07B1.5 [Caenorhabditis elegans] sp|Q09419|YRN5_CAEEL Hypothetical protein R07B1.5 in chromosome X precursor 6.0E-44
blast CAE58724 Hypothetical protein CBG01909 [Caenorhabditis briggsae] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 1.5E-31
Pfam IPR002601 EMBL-EBI Protein of unknown function C6 9.1E-24
Sequence
Target Sequence 
>C. ELEGANS:186814_AT
ttgctcatattttagctgtttctattgttgtcagaataacagactcgtgtgctgccacgt
caggaacaactactacaaccatcgccccaactacttgcacaacttgcacaacagacctca
ttggaattgttactggtaacgatggtgacatgacaccaacttctgcaattacggcggacg
caaatggatgctcagtcataacgtacacgtgtgaaagaactcctgtggtcgcaacagacg
tagtgctaatcacattctacagtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCTCATATTTTAGCTGTTTCTAT 596 703 26 Antisense
GAATAACAGACTCGTGTGCTGCCAC 301 327 59 Antisense
GTGCTGCCACGTCAGGAACAACTAC 502 479 74 Antisense
CACAACTTGCACAACAGACCTCATT 21 195 123 Antisense
AGACCTCATTGGAATTGTTACTGGT 688 69 138 Antisense
CAACTTCTGCAATTACGGCGGACGC 429 187 182 Antisense
GGCGGACGCAAATGGATGCTCAGTC 398 541 198 Antisense
ATGCTCAGTCATAACGTACACGTGT 202 43 213 Antisense
GTGAAAGAACTCCTGTGGTCGCAAC 451 479 236 Antisense
GTGGTCGCAACAGACGTAGTGCTAA 337 489 250 Antisense
GTAGTGCTAATCACATTCTACAGTG 206 457 265 Antisense
Sequence Source Affymetrix Proprietary Database