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[186809_at]

Description Y71F9B.14 /REP_DB=WormBase Gene ID /WP=CE22852 /TR=Q9N4F8 /GB=AAF36026.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 33      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.6
(-3)
A 		10.8
(2.1)
A 		4.7
(-1.7)
A 		12.2
(3)
A 		10
B 7.6
(-1.7)
A 		7.2
(-1.9)
A 		16.3
(3)
A 		5.1
(-3)
A 		11
C 2.9
(-3)
A 		4.4
(-1.3)
A 		2.9
(-3)
A 		8.1
(3)
A 		5
avr 4.4
(-3) 		7.5
(1.5) 		8
(2.3) 		8.5
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9
(0.5)
A 		5.2
(-1.6)
A 		9.9
(1)
A 		2.7
(-3)
A 		13.5
(3)
A 		6.7
(-0.8)
A 		11
B 6.4
(0.6)
A 		3.3
(-2.3)
A 		4.4
(-1.2)
A 		3.2
(-2.4)
A 		2.5
(-3)
A 		9
(3)
A 		7
C 6.5
(-1.5)
A 		14
(3)
A 		4.6
(-2.6)
A 		9.7
(0.4)
A 		10.4
(0.8)
A 		4
(-3)
A 		10
avr 7.3
(0.5) 		7.5
(0.8) 		6.3
(-1.2) 		5.2
(-3) 		8.8
(3) 		6.6
(-0.7) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1
(-3)
A 		2.4
(3)
A 		1.2
(-2.1)
A 		1.8
(0.4)
A 		1
B 2.4
(-0.1)
A 		1.8
(-1.4)
A 		3.8
(3)
A 		1.1
(-3)
A 		3
C 1
(-3)
A 		1.3
(1.5)
A 		1
(-3)
A 		1.4
(3)
A 		0
avr 1.5
(-2) 		1.8
(1) 		2
(3) 		1.4
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.7
(-1.2)
A 		1.8
(-1.1)
A 		2.1
(-0.5)
A 		0.7
(-3)
A 		4.1
(3)
A 		1.6
(-1.4)
A 		3
B 2.2
(0.1)
A 		1.1
(-2.5)
A 		1.1
(-2.5)
A 		0.9
(-3)
A 		1
(-2.8)
A 		3.4
(3)
A 		3
C 2.4
(-0.7)
A 		4.3
(3)
A 		1.2
(-3)
A 		1.9
(-1.6)
A 		3.4
(1.3)
A 		1.3
(-2.8)
A 		3
avr 2.1
(0.4) 		2.4
(1.5) 		1.5
(-1.9) 		1.2
(-3) 		2.8
(3) 		2.1
(0.4) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.280
Sequence Type Exemplar sequence
Representative Public ID Y71F9B.14 NCBI
Target Description Y71F9B.14 /REP_DB=WormBase Gene ID /WP=CE22852 /TR=Q9N4F8 /GB=AAF36026.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058641(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058641 NCBI Caenorhabditis elegans Y71F9B.14 (Y71F9B.14) mRNA, complete cds. 11/11 None
SNAP00000013315 ENSEMBL cdna:SNAP chromosome:CEL140:I:2780163:2781969:-1 11/11 None
GENEFINDER00000013362 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2780163:2784212:-1 11/11 None
Y71F9B.14 ENSEMBL cdna:known chromosome:CEL140:I:2780851:2782772:-1 gene:Y71F9B.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2780850-2782772(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71F9B.14
Entrez Gene 190591 Entrez gene
SwissProt Q9N4F8 EMBL-EBI
WormBase CE22852 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36026 Hypothetical protein Y71F9B.14 [Caenorhabditis elegans] ref|NP_491042.1| Y71F9B.14 [Caenorhabditis elegans] 1.0E-158
blast AAF36026 Hypothetical protein Y71F9B.14 [Caenorhabditis elegans] ref|NP_491042.1| Y71F9B.14 [Caenorhabditis elegans] 1.0E-139
blast AAF36013 Hypothetical protein Y71F9B.15 [Caenorhabditis elegans] ref|NP_491043.1| Y71F9B.15 [Caenorhabditis elegans] 1.0E-92
blast AAF36026 Hypothetical protein Y71F9B.14 [Caenorhabditis elegans] ref|NP_491042.1| Y71F9B.14 [Caenorhabditis elegans] 8.0E-81
blast AAB96686 Hypothetical protein C46E10.1 [Caenorhabditis elegans] ref|NP_494631.2| C46E10.1 [Caenorhabditis elegans] 2.0E-18
blast AAB96686 Hypothetical protein C46E10.1 [Caenorhabditis elegans] ref|NP_494631.2| C46E10.1 [Caenorhabditis elegans] 9.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491042.1 1 406-428
Y71F9B.14 1 406-428
Sequence
Target Sequence 
>C. ELEGANS:186809_AT
ggatgctcccaaaagtacagctccagcaacggaccccccgagaactacaattcctccagc
tattgtcactactgaagctatcccaccagaagttacgactacaacttcggaatcatcgac
agcaccggtccctcctgagcccttaacatctgctccaagtatggtggcaaccacggatcc
tcctgaagctacagctccagcaacggaccccccgacaactatgattcctccagctgtcgt
gactactgaagctaacatcattacaacagaggcaacagctattataccaaaaaccgttcc
tccagccgtcataaccactgaaactactccagcagaagttgtaaccgaacttttggaaac
aacgacagcaccggctcccgctgaagcattgaccgctgctccggctccagtgaaggagcc
tgcaactccagaacctaccaagactcaggcaccagttcctagtgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCTCCCAAAAGTACAGCTCCA 169 513 687 Antisense
ACAATTCCTCCAGCTATTGTCACTA 43 115 733 Antisense
TTGTCACTACTGAAGCTATCCCACC 180 709 749 Antisense
GCTATCCCACCAGAAGTTACGACTA 525 303 763 Antisense
TTCGGAATCATCGACAGCACCGGTC 46 693 792 Antisense
GAGCCCTTAACATCTGCTCCAAGTA 609 383 823 Antisense
GACAACTATGATTCCTCCAGCTGTC 616 365 900 Antisense
CTCCAGCCGTCATAACCACTGAAAC 194 233 986 Antisense
TTGGAAACAACGACAGCACCGGCTC 622 707 1039 Antisense
CAGAACCTACCAAGACTCAGGCACC 5 203 1115 Antisense
ACTCAGGCACCAGTTCCTAGTGAAC 421 99 1129 Antisense
Sequence Source Affymetrix Proprietary Database