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[186808_s_at]

Description R10D12.13B /REP_DB=WormBase Gene ID /WP=CE23920 /TR=Q9U385 /GB=CAB54296.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 85      4grp_highest_8_8 > 35      4grp_high_8_8 > 48      6grp_highest_nonorm > 72      6grp_total > 75      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 283.3
(3)
P 		234.1
(-0.8)
P 		254.6
(0.8)
P 		205.4
(-3)
P 		78
B 296.2
(3)
P 		180
(-3)
P 		256.8
(1)
P 		207.6
(-1.6)
P 		116
C 319.9
(3)
P 		206.6
(-3)
P 		233.1
(-1.6)
P 		225.2
(-2)
P 		113
avr 299.8
(3) 		206.9
(-3) 		248.2
(-0.3) 		212.7
(-2.6) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 271.8
(-3)
P 		317.5
(-1.9)
P 		439.4
(1.2)
P 		422.3
(0.8)
P 		412
(0.5)
P 		512.2
(3)
P 		240
B 337.3
(-2.6)
P 		319.1
(-3)
P 		327.3
(-2.8)
P 		408.1
(-1)
P 		436.1
(-0.4)
P 		584.2
(3)
P 		265
C 247.3
(-3)
P 		370.2
(-0.4)
P 		439.9
(1.1)
P 		443.6
(1.2)
P 		345.1
(-0.9)
P 		531
(3)
P 		284
avr 285.5
(-3) 		335.6
(-1.8) 		402.2
(-0.3) 		424.7
(0.2) 		397.7
(-0.4) 		542.5
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 103.2
(3)
P 		50.8
(-1.3)
P 		66.6
(-0)
P 		30.1
(-3)
P 		73
B 94.4
(3)
P 		44.5
(-3)
P 		59.5
(-1.2)
P 		44.2
(-3)
P 		50
C 105.9
(3)
P 		59.4
(-1.1)
P 		81.2
(0.8)
P 		38
(-3)
P 		68
avr 101.2
(3) 		51.6
(-1.7) 		69.1
(-0) 		37.4
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 50.1
(-3)
P 		112.9
(2.1)
P 		95.7
(0.7)
P 		107.1
(1.6)
P 		124.3
(3)
P 		124.7
(3)
P 		75
B 117.4
(-1.4)
P 		106.2
(-1.8)
P 		79.5
(-3)
P 		108.1
(-1.8)
P 		177.2
(1.2)
P 		217.8
(3)
P 		138
C 91.6
(-2.8)
P 		113
(-1.4)
P 		112
(-1.5)
P 		89.2
(-3)
P 		111.7
(-1.5)
P 		177.8
(3)
P 		89
avr 86.4
(-3) 		110.7
(-1.3) 		95.7
(-2.4) 		101.5
(-2) 		137.7
(0.5) 		173.4
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186808_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13718
Sequence Type Exemplar sequence
Representative Public ID R10D12.13B NCBI
Target Description R10D12.13B /REP_DB=WormBase Gene ID /WP=CE23920 /TR=Q9U385 /GB=CAB54296.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074067(11), NM_074068(11), NM_074069(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074067 NCBI Caenorhabditis elegans R10D12.13b (R10D12.13) mRNA, complete cds. 11/11 None
NM_074068 NCBI Caenorhabditis elegans R10D12.13a (R10D12.13) mRNA, complete cds. 11/11 None
NM_074069 NCBI Caenorhabditis elegans R10D12.13c (R10D12.13) mRNA, complete cds. 11/11 None
SNAP00000021057 ENSEMBL cdna:SNAP chromosome:CEL140:V:13965005:13966379:1 11/11 None
GENEFINDER00000021062 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13965005:13966379:1 11/11 None
R10D12.13c ENSEMBL cdna:known chromosome:CEL140:V:13965005:13966379:1 gene:R10D12.13 11/11 None
R10D12.13b ENSEMBL cdna:known chromosome:CEL140:V:13965012:13966379:1 gene:R10D12.13 11/11 None
R10D12.13a ENSEMBL cdna:known chromosome:CEL140:V:13965034:13967993:1 gene:R10D12.13 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13965097-13966379(+) 100.0 100.0
Public Domain and Genome References
Ensembl R10D12.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54296 Hypothetical protein R10D12.13b [Caenorhabditis elegans] ref|NP_506468.1| R10D12.13b [Caenorhabditis elegans] 1.0E-138
blast CAB03248 Hypothetical protein R10D12.13a [Caenorhabditis elegans] ref|NP_506469.1| R10D12.13a [Caenorhabditis elegans] 1.0E-137
blast CAB03248 Hypothetical protein R10D12.13a [Caenorhabditis elegans] ref|NP_506469.1| R10D12.13a [Caenorhabditis elegans] 1.0E-136
blast CAB54296 Hypothetical protein R10D12.13b [Caenorhabditis elegans] ref|NP_506468.1| R10D12.13b [Caenorhabditis elegans] 1.0E-136
Sequence
Target Sequence 
>C. ELEGANS:186808_S_AT
gaaggcgaatttttctctgatgcgaaaatgagagaaagggaaccctatctctttgatgca
atgattggaaagtttctgaacgatgaagaaagaatggaccatcttcgtccaactgtgtct
cgtgacaaatcggaatctacttggtctactctaatggaccgccttgaggacagtacagag
attgctgaacgccggaatcttcaagaaagggaatgggaaggctcgcgggaccttgatgat
gggggaagagatcatataaaccggttcatgtctcatgtcgatagtcatgccgagaatttt
gtgccagaagaggaggagggagacgaagaaagcactgaaaaagttgaggatgagattgaa
acgatgcggaaagaaatggaaagactgtctaaaattgaagctgagcagtacgatgattta
gacgagaatgaaacgcaacaagtccttcgtcgagagtttgaggctttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGGCGAATTTTTCTCTGATGCGA 535 333 229 Antisense
GGAACCCTATCTCTTTGATGCAATG 593 529 267 Antisense
TTCGTCCAACTGTGTCTCGTGACAA 262 695 332 Antisense
ATCGGAATCTACTTGGTCTACTCTA 604 33 357 Antisense
GGTCTACTCTAATGGACCGCCTTGA 74 487 371 Antisense
GGACCGCCTTGAGGACAGTACAGAG 373 523 384 Antisense
GATTGCTGAACGCCGGAATCTTCAA 536 433 408 Antisense
AAACCGGTTCATGTCTCATGTCGAT 471 125 486 Antisense
GTCATGCCGAGAATTTTGTGCCAGA 111 467 512 Antisense
GAAACGCAACAAGTCCTTCGTCGAG 272 355 658 Antisense
CTTCGTCGAGAGTTTGAGGCTTTCA 532 219 673 Antisense
Sequence Source Affymetrix Proprietary Database