[Home] | [Total List]

[186807_at]

Description ZK673.4 /REP_DB=WormBase Gene ID /WP=CE01716 /TR=SW:Q09663 /GB=CAA88480.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 43      4grp_high_8_8 > 07      6grp_total > 30      4grp_total > 05      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 175.5
(-2.2)
P 		178.1
(-2)
A 		162.3
(-3)
M 		260.6
(3)
P 		98
B 193
(2.2)
P 		130
(-3)
P 		170.3
(0.3)
P 		203.1
(3)
P 		73
C 198.8
(-1.6)
P 		177.3
(-3)
A 		185
(-2.5)
P 		270.1
(3)
P 		93
avr 189.1
(-1) 		161.8
(-3) 		172.5
(-2.2) 		244.6
(3) 		83

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 191.6
(-0.2)
P 		178.7
(-1.5)
P 		188.2
(-0.6)
P 		224.1
(3)
P 		186.5
(-0.7)
P 		163.7
(-3)
P 		60
B 117.4
(-3)
P 		232.8
(2.5)
P 		183.8
(0.2)
P 		243.7
(3)
P 		147.6
(-1.6)
P 		147.8
(-1.6)
P 		126
C 174.9
(-0.2)
A 		251.2
(3)
P 		198.4
(0.8)
P 		208.8
(1.2)
P 		108.7
(-3)
P 		162.4
(-0.7)
P 		143
avr 161.3
(-1.9) 		220.9
(2.6) 		190.1
(0.3) 		225.5
(3) 		147.6
(-3) 		158
(-2.2) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 63.9
(3)
P 		38.7
(-2.9)
A 		42.4
(-2)
M 		38.2
(-3)
P 		26
B 61.5
(3)
P 		32.1
(-3)
P 		39.5
(-1.5)
P 		43.3
(-0.7)
P 		29
C 65.8
(3)
P 		51
(-1.4)
A 		64.5
(2.6)
P 		45.5
(-3)
P 		20
avr 63.7
(3) 		40.6
(-3) 		48.8
(-0.9) 		42.3
(-2.6) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 35.3
(-3)
P 		63.6
(3)
P 		41
(-1.8)
P 		56.8
(1.6)
P 		56.3
(1.5)
P 		39.9
(-2)
P 		28
B 40.9
(-3)
P 		77.5
(3)
P 		44.6
(-2.4)
P 		64.5
(0.9)
P 		59.9
(0.1)
P 		55.1
(-0.7)
P 		37
C 64.8
(1.3)
A 		76.7
(3)
P 		50.5
(-0.8)
P 		42
(-2)
P 		35.2
(-3)
P 		54.4
(-0.2)
P 		42
avr 47
(-2.6) 		72.6
(3) 		45.4
(-3) 		54.4
(-1) 		50.5
(-1.9) 		49.8
(-2) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3298
Sequence Type Exemplar sequence
Representative Public ID ZK673.4 NCBI
Target Description ZK673.4 /REP_DB=WormBase Gene ID /WP=CE01716 /TR=SW:Q09663 /GB=CAA88480.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063846(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063846 NCBI Caenorhabditis elegans ZK673.4 (ZK673.4) mRNA, complete cds. 11/11 None
SNAP00000007626 ENSEMBL cdna:SNAP chromosome:CEL140:II:10452830:10454995:1 11/11 None
GENEFINDER00000007641 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10452830:10454995:1 11/11 None
ZK673.4 ENSEMBL cdna:known chromosome:CEL140:II:10452650:10454947:1 gene:ZK673.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10452646-10454944(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK673.4
Entrez Gene 191389 Entrez gene
SwissProt Q09663 EMBL-EBI
WormBase CE01716 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA88480 Hypothetical protein ZK673.4 [Caenorhabditis elegans] ref|NP_496247.1| ZK673.4 [Caenorhabditis elegans] sp|Q09663|YS54_CAEEL Hypothetical protein ZK673.4 in chromosome II 0.0
blast CAA88485 Hypothetical protein ZK673.3 [Caenorhabditis elegans] ref|NP_496246.1| ZK673.3 [Caenorhabditis elegans] sp|Q09377|YS53_CAEEL Hypothetical protein ZK673.3 in chromosome II 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:186807_AT
gacgaatatcgtgcacacttgaagcgatggatgacatctcatcaaccaaaagtttcgaaa
aaacgagttcaaaaaacaaccatcgcggatgagttattccaacttgccaatttcgcaaat
caatcaattccacacgagttcttccaacacatgcttcaagatcaagaagaacacgaagca
aaaagagtaaaattagaagaaccagaatttgaagaacatttcgatgagcagccgagcacc
tcatcctacatggcaaccgcaactgcaacagcaaccgccactccatttccatcaaagatg
acagttttgacattggcaaatggcaaaaaagtgacaaaagcgccgtctctaccgccttca
gttttgaactctggaaagcttgtaacttggaaggtctctagaagaactcatggatcaact
agttcaactcccagagcttctcccagcttacctgcagaagatcatggcttcattcctgat
gctgatggtcctgtatctgaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAATATCGTGCACACTTGAAGC 340 379 871 Antisense
AGTTATTCCAACTTGCCAATTTCGC 526 63 962 Antisense
ACACGAGTTCTTCCAACACATGCTT 300 109 1002 Antisense
CATTTCGATGAGCAGCCGAGCACCT 377 213 1087 Antisense
ACATGGCAACCGCAACTGCAACAGC 541 105 1118 Antisense
GCCACTCCATTTCCATCAAAGATGA 469 279 1147 Antisense
AAGTGACAAAAGCGCCGTCTCTACC 330 157 1199 Antisense
AACTAGTTCAACTCCCAGAGCTTCT 67 141 1287 Antisense
TTCTCCCAGCTTACCTGCAGAAGAT 538 693 1308 Antisense
TCATGGCTTCATTCCTGATGCTGAT 360 623 1332 Antisense
GATGCTGATGGTCCTGTATCTGAGA 587 413 1348 Antisense
Sequence Source Affymetrix Proprietary Database