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[186806_at]

Description Y51H7BR.1 /REP_DB=WormBase Gene ID /WP=CE24414 /TR=Q9N3J6 /GB=AAF60745.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 01      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 14.7
(-2.6)
A 		8.6
(-3)
A 		23.7
(-1.9)
A 		91
(3)
A 		82
B 11.1
(-2)
A 		8.7
(-3)
A 		21.8
(2.6)
A 		22.7
(3)
A 		14
C 7
(-2.3)
A 		9.6
(-1.9)
A 		3
(-3)
A 		39.8
(3)
A 		37
avr 10.9
(-2.7) 		9
(-3) 		16.2
(-2) 		51.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 60.7
(3)
A 		3.8
(-3)
A 		23.8
(-0.9)
A 		14.3
(-1.9)
A 		15.1
(-1.8)
A 		61.1
(3)
A 		57
B 7.2
(-2.9)
A 		9.2
(-2.7)
A 		14.7
(-2.2)
A 		6.5
(-3)
A 		12.4
(-2.5)
A 		71.2
(3)
A 		65
C 5.3
(-3)
A 		30.3
(-1.3)
A 		6.6
(-2.9)
A 		26.2
(-1.6)
A 		21.3
(-1.9)
A 		92
(3)
P 		87
avr 24.4
(-2) 		14.4
(-3) 		15
(-2.9) 		15.7
(-2.9) 		16.3
(-2.8) 		74.8
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.4
(-1.2)
A 		1.9
(-3)
A 		6.2
(-0.7)
A 		13.3
(3)
A 		11
B 3.6
(-0)
A 		2.2
(-3)
A 		5
(3)
A 		4.8
(2.6)
A 		3
C 2.3
(-1.6)
A 		2.7
(-1.2)
A 		1
(-3)
A 		6.7
(3)
A 		6
avr 3.8
(-1.5) 		2.3
(-3) 		4.1
(-1.2) 		8.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 11.2
(1.4)
A 		1.4
(-3)
A 		5.2
(-1.3)
A 		3.6
(-2)
A 		4.6
(-1.6)
A 		14.9
(3)
A 		14
B 2.5
(-2.8)
A 		3.1
(-2.7)
A 		3.6
(-2.5)
A 		1.7
(-3)
A 		5
(-2.2)
A 		26.6
(3)
A 		25
C 2
(-2.9)
A 		9.3
(-1.4)
A 		1.7
(-3)
A 		5.3
(-2.3)
A 		6.9
(-1.9)
A 		30.8
(3)
P 		29
avr 5.2
(-2.5) 		4.6
(-2.7) 		3.5
(-3) 		3.5
(-3) 		5.5
(-2.4) 		24.1
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5819
Sequence Type Exemplar sequence
Representative Public ID Y51H7BR.1 NCBI
Target Description Y51H7BR.1 /REP_DB=WormBase Gene ID /WP=CE24414 /TR=Q9N3J6 /GB=AAF60745.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061589(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061589 NCBI Caenorhabditis elegans Y51H7BR.1 (Y51H7BR.1) mRNA, complete cds. 11/11 None
SNAP00000028993 ENSEMBL cdna:SNAP chromosome:CEL140:II:1537687:1538494:1 10/11 None
GENEFINDER00000028994 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1537627:1538494:1 10/11 None
Y51H7BR.1 ENSEMBL cdna:known chromosome:CEL140:II:1537627:1538633:1 gene:Y51H7BR.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1537625-1538632(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7BR.1
Entrez Gene 190167 Entrez gene
SwissProt Q9N3J6 EMBL-EBI
WormBase CE24414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60745 Hypothetical protein Y51H7BR.1 [Caenorhabditis elegans] ref|NP_493990.1| Y51H7BR.1 [Caenorhabditis elegans] 0.0
blast AAF60745 Hypothetical protein Y51H7BR.1 [Caenorhabditis elegans] ref|NP_493990.1| Y51H7BR.1 [Caenorhabditis elegans] 1.0E-155
blast AAF60745 Hypothetical protein Y51H7BR.1 [Caenorhabditis elegans] ref|NP_493990.1| Y51H7BR.1 [Caenorhabditis elegans] 1.0E-144
blast AAF60744 Hypothetical protein Y51H7BR.2 [Caenorhabditis elegans] ref|NP_493989.1| Y51H7BR.2 [Caenorhabditis elegans] 5.0E-95
blast AAF60744 Hypothetical protein Y51H7BR.2 [Caenorhabditis elegans] ref|NP_493989.1| Y51H7BR.2 [Caenorhabditis elegans] 2.0E-87
blast AAF60744 Hypothetical protein Y51H7BR.2 [Caenorhabditis elegans] ref|NP_493989.1| Y51H7BR.2 [Caenorhabditis elegans] 1.0E-77
blast AAB95025 Hypothetical protein K05F6.5 [Caenorhabditis elegans] ref|NP_493991.1| K05F6.5 [Caenorhabditis elegans] 2.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-6
Sequence
Target Sequence 
>C. ELEGANS:186806_AT
gtaacggtcactgatgcattcgatgagttgagatttcagttagttaagaaattcttggaa
aagattcaatttatggttctttggattagaacgacttccgccacgagccacatggtcaga
cttttttccgaagttctaccagtcgatcaattctggttaagtcaagacgatcggttgaac
tcctctcaattctcagccctcaggccagttttgtccaaggaacttgaaaccatctttata
gacaacagaatgccgttaaacgatctacttatcacatgctccacagccattcatattatc
aaatcaccgctaactgataaggaaatcaatgtgtttctaaaacattggatgactggattg
aaaccagaacttgagcatatttatattgaaaagagtggagttttcaaccaaacccaactc
ctggacggaattaatcatgatgcaccgactgacaggaaattcaaaatgtacggtaatgat
gcatttagaggaattgatcttcacctaggcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACGGTCACTGATGCATTCGATG 588 461 367 Antisense
TTGGATTAGAACGACTTCCGCCACG 117 705 447 Antisense
GAGCCACATGGTCAGACTTTTTTCC 228 383 471 Antisense
AAGTTCTACCAGTCGATCAATTCTG 611 155 497 Antisense
CAAGACGATCGGTTGAACTCCTCTC 217 183 529 Antisense
GGAACTTGAAACCATCTTTATAGAC 11 529 585 Antisense
AACGATCTACTTATCACATGCTCCA 179 145 625 Antisense
TGCTCCACAGCCATTCATATTATCA 130 583 643 Antisense
CATATTATCAAATCACCGCTAACTG 578 213 658 Antisense
AATCATGATGCACCGACTGACAGGA 130 171 799 Antisense
GAGGAATTGATCTTCACCTAGGCCA 693 399 854 Antisense
Sequence Source Affymetrix Proprietary Database