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[186805_s_at]

Description Y116F11B.4 /REP_DB=WormBase Gene ID /WP=CE26049 /TR=Q9GRV8 /GB=CAC14391.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 19      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 2.6
(-2.8)
A 		26.5
(-0.5)
A 		0.9
(-3)
A 		61.5
(3)
P 		61
B 26.2
(0.1)
A 		9.9
(-1.9)
A 		0.7
(-3)
A 		50.3
(3)
P 		50
C 11.3
(-1.9)
A 		22
(-0.9)
A 		0.7
(-3)
A 		60.9
(3)
P 		60
avr 13.4
(-1.7) 		19.5
(-1) 		0.8
(-3) 		57.6
(3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 4.4
(-2.4)
A 		20.3
(0)
A 		39.7
(3)
A 		0.8
(-3)
A 		3.4
(-2.6)
A 		7
(-2)
A 		39
B 25.1
(2.6)
P 		18.4
(1)
A 		27
(3)
A 		7.8
(-1.4)
A 		12.3
(-0.3)
M 		0.6
(-3)
A 		26
C 0.7
(-3)
A 		38
(3)
P 		1.3
(-2.9)
A 		32.3
(2.1)
A 		20.2
(0.1)
A 		18.7
(-0.1)
P 		37
avr 10.1
(-2.5) 		25.6
(3) 		22.7
(2) 		13.6
(-1.3) 		12
(-1.9) 		8.8
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.9
(-2.5)
A 		5.7
(0.8)
A 		0.2
(-3)
A 		9
(3)
P 		9
B 8.3
(1.6)
A 		2.4
(-1.7)
A 		0.2
(-3)
A 		10.7
(3)
P 		11
C 3.8
(-0.9)
A 		6.3
(0.6)
A 		0.2
(-3)
A 		10.3
(3)
P 		10
avr 4.3
(-0.5) 		4.8
(-0.2) 		0.2
(-3) 		10
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 0.8
(-2.6)
A 		7.2
(2)
A 		8.6
(3)
A 		0.2
(-3)
A 		1
(-2.4)
A 		1.7
(-1.9)
A 		8
B 8.7
(3)
P 		6.1
(1.2)
A 		6.5
(1.4)
A 		2.1
(-1.7)
A 		5
(0.4)
M 		0.2
(-3)
A 		9
C 0.3
(-3)
A 		11.6
(3)
P 		0.3
(-3)
A 		6.5
(0.3)
A 		6.5
(0.3)
A 		6.3
(0.2)
P 		11
avr 3.3
(-2.4) 		8.3
(3) 		5.1
(-0.4) 		2.9
(-2.8) 		4.2
(-1.4) 		2.7
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186805_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13796
Sequence Type Exemplar sequence
Representative Public ID Y116F11B.4 NCBI
Target Description Y116F11B.4 /REP_DB=WormBase Gene ID /WP=CE26049 /TR=Q9GRV8 /GB=CAC14391.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y116F11B.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:19837400:19839469:-1 gene:Y116F11B.4 11/11 None
F19B2.4 ENSEMBL cdna:pseudogene chromosome:CEL140:V:20165306:20167280:1 gene:F19B2.4 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019287 3/11 Cross Hyb Matching Probes None
GENEFINDER00000031777 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20165305-20167231(+) 93.16 93.16
chrV:19837399-19839469(-) 97.61 100.0
Public Domain and Genome References
Ensembl Y116F11B.4
F19B2.4
Sequence
Target Sequence 
>C. ELEGANS:186805_S_AT
tattgattattctactggctattgagaaattcaccatttactttttcccatcaactgaga
aatttgtgatatcggcgcaaaagtatcagataaaacatgttagatatatgtatttagtga
tattcattgttcagtcaattctgacattgaatgcgttcggagttcggttttggaacataa
atgaaattaagatacgatcgataatatacataagctttaatatcatattcatactctcgg
ccttgctatacgttcccataatgttcagcgttagaaagttttccaatcttccgtcggttc
aacagaacaaaccgcaactatatatcaggtcgtcccataagtttttgacgaaggagcaag
cgtttgaggaattagttgttcttatgatgtttttggatattgttgttattccacaaattg
ttcaaatatcatatatcagttgtaacaagcgaaatatggatactttgttgaagtcgttca
gttgcattaaattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGATTATTCTACTGGCTATTGA 699 663 368 Antisense
GATATTCATTGTTCAGTCAATTCTG 111 427 486 Antisense
TGACATTGAATGCGTTCGGAGTTCG 194 571 509 Antisense
AATATCATATTCATACTCTCGGCCT 637 173 586 Antisense
CCTTGCTATACGTTCCCATAATGTT 19 269 608 Antisense
CGTTCCCATAATGTTCAGCGTTAGA 599 245 618 Antisense
TTCAACAGAACAAACCGCAACTATA 626 683 665 Antisense
AGTTGTTCTTATGATGTTTTTGGAT 545 63 741 Antisense
GGATATTGTTGTTATTCCACAAATT 594 509 762 Antisense
GGATACTTTGTTGAAGTCGTTCAGT 254 505 825 Antisense
GAAGTCGTTCAGTTGCATTAAATTT 591 335 837 Antisense
Sequence Source Affymetrix Proprietary Database