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[186804_at]

Description C05B5.4 /REP_DB=WormBase Gene ID /WP=CE00880 /TR=SW:P34292 /GB=CAA83591.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 23      4grp_high_8_8 > 51      6grp_highest_nonorm > 80      6grp_total > 21      4grp_total > 52      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 226
1 2 3 4 range
A 278.6
(2.4)
P 		293.9
(3)
P 		197.4
(-0.5)
P 		127.6
(-3)
M 		166
B 307.9
(2.8)
P 		284.7
(2.2)
P 		316.7
(3)
P 		90.4
(-3)
P 		226
C 307.6
(3)
P 		275.9
(1.5)
P 		248.2
(0.2)
P 		179.1
(-3)
P 		129
avr 298
(3) 		284.8
(2.5) 		254.1
(1.4) 		132.4
(-3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 230
1 2 3 4 5 6 range
A 240.8
(-0.2)
P 		348
(3)
P 		229.3
(-0.5)
P 		214.2
(-1)
P 		146.6
(-3)
P 		165.6
(-2.4)
P 		201
B 259.5
(0.9)
P 		272.2
(1.3)
P 		334.9
(3)
P 		233.9
(0.2)
P 		117.9
(-3)
P 		183.8
(-1.2)
P 		217
C 214.2
(-0.9)
P 		289.6
(3)
P 		211.4
(-1.1)
P 		239.4
(0.4)
P 		190.7
(-2.1)
P 		173.8
(-3)
P 		116
avr 238.2
(0.4) 		303.3
(3) 		258.5
(1.2) 		229.2
(0.1) 		151.7
(-3) 		174.4
(-2.1) 		152
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 101.4
(3)
P 		63.8
(0.3)
P 		51.6
(-0.6)
P 		18.7
(-3)
M 		83
B 98.2
(3)
P 		70.3
(0.9)
P 		73.4
(1.1)
P 		19.3
(-3)
P 		79
C 101.8
(3)
P 		79.3
(1.1)
P 		86.5
(1.7)
P 		30.2
(-3)
P 		72
avr 100.5
(3) 		71.1
(0.7) 		70.5
(0.7) 		22.7
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 44.4
(-2.7)
P 		123.8
(3)
P 		49.9
(-2.3)
P 		54.3
(-2)
P 		44.2
(-2.7)
P 		40.3
(-3)
P 		84
B 90.3
(3)
P 		90.6
(3)
P 		81.3
(1.7)
P 		62
(-1)
P 		47.9
(-3)
P 		68.6
(-0.1)
P 		43
C 79.4
(1.7)
P 		88.4
(3)
P 		53.8
(-2.2)
P 		48.1
(-3)
P 		61.7
(-1)
P 		58.2
(-1.5)
P 		40
avr 71.4
(-0.6) 		100.9
(3) 		61.7
(-1.7) 		54.8
(-2.6) 		51.3
(-3) 		55.7
(-2.5) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 186804_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6953
Sequence Type Exemplar sequence
Representative Public ID C05B5.4 NCBI
Target Description C05B5.4 /REP_DB=WormBase Gene ID /WP=CE00880 /TR=SW:P34292 /GB=CAA83591.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066815(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066815 NCBI Caenorhabditis elegans C05B5.4 (C05B5.4) mRNA, complete cds. 11/11 None
SNAP00000026740 ENSEMBL cdna:SNAP chromosome:CEL140:III:9993794:9995998:1 11/11 None
GENEFINDER00000026761 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:9993794:9995998:1 11/11 None
C05B5.4 ENSEMBL cdna:known chromosome:CEL140:III:9993776:9995998:1 gene:C05B5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9993771-9995994(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05B5.4
Entrez Gene 182246 Entrez gene
SwissProt P34292 EMBL-EBI
WormBase CE00880 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83591 Hypothetical protein C05B5.4 [Caenorhabditis elegans] ref|NP_499216.1| C05B5.4 [Caenorhabditis elegans] sp|P34292|YKO4_CAEEL Hypothetical protein C05B5.4 in chromosome III 1.0E-169
blast S43573 C05B5.4 protein (clone C05B5) - Caenorhabditis elegans 1.0E-165
blast CAA83591 Hypothetical protein C05B5.4 [Caenorhabditis elegans] ref|NP_499216.1| C05B5.4 [Caenorhabditis elegans] sp|P34292|YKO4_CAEEL Hypothetical protein C05B5.4 in chromosome III 1.0E-165
blast CAE65074 Hypothetical protein CBG09928 [Caenorhabditis briggsae] 1.0E-143
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499216.1 1 216-238
C05B5.4 1 216-238
SNAP00000026740 1 210-232
GENEFINDER00000026761 1 210-232
Sequence
Target Sequence 
>C. ELEGANS:186804_AT
caagaacttgcgaccagacgcctgctgttagaatatttccagtggatctttatgagctgg
ctcccgagtcggcagaaaataaaacgattcatctgaaggcgaaatgttttgaagcaacga
ttactgtcacgaagcatgtggaaaggtgtccatggtgtccggatccgcaagagattttaa
tttcaaatgagattccacaacagataaacctgcaacaatcggctctagaatctggaattc
attcatttgttggcattttctacaaatcatcaacttccgaatctcttcaagttggaattt
gtttgcttgcagctttggccttttttgctagtctagcttttatcattatgctttcagttt
acctgaaatccaaaaaatcatctcgaagaaatgttagtgtaaacgttcagccacgtctca
ttccatataacagccgttgcgacgattatgacacacgatacgatatgccttgggatcaac
aacgtccactgacatattggatgtcaaaatctacagtaacctctccaaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGAACTTGCGACCAGACGCCTGC 330 185 362 Antisense
GACGCCTGCTGTTAGAATATTTCCA 309 381 378 Antisense
AGTGGATCTTTATGAGCTGGCTCCC 308 59 402 Antisense
GAAAGGTGTCCATGGTGTCCGGATC 32 359 502 Antisense
TAAACCTGCAACAATCGGCTCTAGA 191 641 566 Antisense
ATTTGTTTGCTTGCAGCTTTGGCCT 702 17 658 Antisense
TTTGGCCTTTTTTGCTAGTCTAGCT 162 665 675 Antisense
GCCACGTCTCATTCCATATAACAGC 412 279 771 Antisense
GACACACGATACGATATGCCTTGGG 379 363 811 Antisense
TTGGGATCAACAACGTCCACTGACA 448 709 831 Antisense
AATCTACAGTAACCTCTCCAAACTC 473 169 869 Antisense
Sequence Source Affymetrix Proprietary Database