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[186802_s_at]

Description F59E12.13 /REP_DB=WormBase Gene ID /WP=CE11542 /TR=O01906 /GB=AAB54261.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 87      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 95      6grp_total > 87      4grp_total > 22      6grp_highest_sub > In      6grp_cgc > 49      6grp_high1_sub > In      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 420
1 2 3 4 range
A 651
(3)
P 		363.7
(-1.1)
P 		231.5
(-3)
P 		470.5
(0.4)
P 		420
B 588
(2.2)
P 		375
(-1)
P 		243.5
(-3)
P 		642.7
(3)
P 		399
C 574.2
(2.7)
P 		345.3
(-2.5)
P 		321
(-3)
P 		589.1
(3)
P 		268
avr 604.4
(3) 		361.3
(-1.3) 		265.3
(-3) 		567.4
(2.3) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 776
1 2 3 4 5 6 range
A 516.3
(-3)
P 		522.4
(-2.9)
P 		537.4
(-2.8)
P 		682.5
(-1.4)
P 		731
(-0.9)
P 		1137.2
(3)
P 		621
B 541.3
(-2)
P 		454.6
(-3)
P 		496.5
(-2.5)
P 		546.9
(-2)
P 		655
(-0.7)
P 		982.4
(3)
P 		528
C 611.4
(-1.8)
P 		450.5
(-3)
P 		615.7
(-1.7)
P 		673.3
(-1.3)
P 		841.2
(0)
P 		1226.9
(3)
P 		776
avr 556.3
(-2.2) 		475.8
(-3) 		549.9
(-2.3) 		634.2
(-1.5) 		742.4
(-0.5) 		1115.5
(3) 		640
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 181
1 2 3 4 range
A 237
(3)
P 		79
(-2.4)
P 		60.5
(-3)
P 		68.9
(-2.7)
P 		177
B 187.5
(3)
P 		92.6
(-1.3)
P 		56.4
(-3)
P 		137
(0.7)
P 		131
C 190.1
(3)
P 		99.3
(-3)
P 		111.9
(-2.2)
P 		99.3
(-3)
P 		91
avr 204.9
(3) 		90.3
(-2.3) 		76.3
(-3) 		101.7
(-1.8) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 316
1 2 3 4 5 6 range
A 95.2
(-3)
P 		185.8
(-0)
P 		117
(-2.3)
P 		173.1
(-0.4)
P 		220.6
(1.1)
P 		276.9
(3)
P 		182
B 188.3
(-1.3)
P 		151.3
(-2.3)
P 		120.6
(-3)
P 		144.8
(-2.4)
P 		266.1
(0.6)
P 		366.3
(3)
P 		246
C 226.6
(-1)
P 		137.5
(-3)
P 		156.7
(-2.5)
P 		135.4
(-3)
P 		272.2
(-0)
P 		410.7
(3)
P 		275
avr 170
(-1.9) 		158.2
(-2.3) 		131.4
(-3) 		151.1
(-2.5) 		253
(0.3) 		351.3
(3) 		220
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 186802_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5394
Sequence Type Exemplar sequence
Representative Public ID F59E12.13 NCBI
Target Description F59E12.13 /REP_DB=WormBase Gene ID /WP=CE11542 /TR=O01906 /GB=AAB54261.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062705(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062705 NCBI Caenorhabditis elegans FUcosyl Transferase family member (fut-3) (fut-3) mRNA, complete cds. 11/11 None
F59E12.13.1 ENSEMBL cdna:known chromosome:CEL140:II:5657699:5659736:-1 gene:F59E12.13 11/11 None
F59E12.13.2 ENSEMBL cdna:known chromosome:CEL140:II:5657699:5659744:-1 gene:F59E12.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5657822-5659734(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol fut-3
Ensembl F59E12.13
Entrez Gene 173958 Entrez gene
SwissProt O01906 EMBL-EBI
WormBase CE29413 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CHICKEN:GGAAFFX.1183.1.S1_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) gga
HG-U133_PLUS_2:216010_X_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HG-U133A_2:216010_X_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HG-U133A:216010_X_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HG-U133_PLUS_2:214088_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HG-U133A_2:214088_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HG-FOCUS:214088_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HG-U133A:214088_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HU35KSUBA:U27328_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HUGENEFL:U27326_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HUGENEFL:U27333_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HUGENEFL:S52969_CDS1_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
U133_X3P:G967208_3P_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
U133_X3P:G182491_3P_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
U133_X3P:HS.169238.3.A1_3P_A_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HG-U95AV2:36290_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
HG-U95AV2:38495_S_AT fucosyltransferase 3 (galactoside 3(4)-L-fucosyltransferase, Lewis blood group included) hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6486 protein amino acid glycosylation inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8417 fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB54261 Fucosyl transferase protein 3 [Caenorhabditis elegans] ref|NP_495106.1| FUcosyl Transferase family member (fut-3) [Caenorhabditis elegans] emb|CAG32978.1| alpha1,3-fucosyltransferase homologue [Caenorhabditis elegans] 0.0
blast CAE59160 Hypothetical protein CBG02466 [Caenorhabditis briggsae] 0.0
blast CAE59716 Hypothetical protein CBG03148 [Caenorhabditis briggsae] 7.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001503 EMBL-EBI Glycosyl transferase, family 10 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495106.1 1 7-29
F59E12.13.1 1 7-29
F59E12.13.2 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:186802_S_AT
atattcgggctcatttccaattgtcatacaaaatcaaaaagagaacttgcacttcaggaa
ctcggaaaacatatcaatgtaacaattggaggaaaatgtgcatccgatgatcgacttaaa
tctatttgtcctgctggagtagagtgcattgatgtattcgagcagtatccattctacatt
gcgatcgagaatacggtgtgtaatgactacgtgactgaaaagatttggtctcgaatcacc
gttccaagcattccaattgtgatgagacgaagagtgtatcaaaatatacttcctccaaaa
tcgttcattgccatggatgactacaagaatccttccgaaatggccaatcatctcagatct
ctcgaggccaattcaactgcctatggagaatattttgaatggcgtcaaaagggtttatgg
acttctgctccttggaacgctcctggatatcgcaatggattgtgccgtgtctgtgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATTCGGGCTCATTTCCAATTGTC 540 17 655 Antisense
AGAACTTGCACTTCAGGAACTCGGA 515 73 696 Antisense
TTAAATCTATTTGTCCTGCTGGAGT 32 685 770 Antisense
GCAGTATCCATTCTACATTGCGATC 294 311 816 Antisense
TTTGGTCTCGAATCACCGTTCCAAG 292 665 878 Antisense
TATACTTCCTCCAAAATCGTTCATT 233 661 939 Antisense
GAATCCTTCCGAAATGGCCAATCAT 560 329 981 Antisense
AATCATCTCAGATCTCTCGAGGCCA 274 171 1000 Antisense
GTTTATGGACTTCTGCTCCTTGGAA 706 445 1067 Antisense
GGAACGCTCCTGGATATCGCAATGG 345 529 1088 Antisense
CAATGGATTGTGCCGTGTCTGTGAG 172 183 1107 Antisense
Sequence Source Affymetrix Proprietary Database